PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G08670.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

DBB

Protein Properties

Length: 357aa MW: 37134.2 Da PI: 6.3796

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G08670.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.9	6.4e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e e++ C ++ lC+ C l+ H H + ONIVA01G08670.1 4 LCSACEAAEARVLCCADDAALCARCDLHVHAAnrlagkHHR 44 7****99*******************55678888554 PP
2	zf-B_box	30.2	9e-10	60	100	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++C+ +++ ++ +fC +++ llC+ C ++ H H ONIVA01G08670.1 60 PPTCDICQDAHAYFFCVEDRALLCRACDVAVHTAnalvsaH 100 789***************************99545566666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.566	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	3.9E-8	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	4.95E-6	3	44	No hit	No description
PROSITE profile	PS50119	9.499	58	105	IPR000315	B-box-type zinc finger
SMART	SM00336	7.6E-16	58	105	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.7E-8	60	92	IPR000315	B-box-type zinc finger
CDD	cd00021	5.10E-9	63	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MKVLCSACEA AEARVLCCAD DAALCARCDL HVHAANRLAG KHHRLPLLSS SSSSSSSPSP 60 PTCDICQDAH AYFFCVEDRA LLCRACDVAV HTANALVSAH RRFLLTGVHV GLDAAADDDD 120 KHPPHPLSSS LPRNTAPPPQ PPPKRSPSPI YSDDDVIDWA TGGHDIGITG NLPDWSLVDE 180 QFNTPALPPV VTKTPPKRAS RGPVTAGTAA AVFGNLAGGS PDWPLNEFFG FADFSSGFGF 240 AENGTSKADS GKIGSMDGSP NGGRSSSSSS SSSAAAAAAG GGQDFFGQVP EVHWAVPELP 300 SPPTASGLHW QRDPRYGGGA TDASAVFVPD ISSPENPFRC FAAAGAGDHT MKRRRRC

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MKVLCSACEA AEARVLCCAD DAALCARCDL HVHAANRLAG KHHRLPLLSS SSSSSSSPSP  60
PTCDICQDAH AYFFCVEDRA LLCRACDVAV HTANALVSAH RRFLLTGVHV GLDAAADDDD  120
KHPPHPLSSS LPRNTAPPPQ PPPKRSPSPI YSDDDVIDWA TGGHDIGITG NLPDWSLVDE  180
QFNTPALPPV VTKTPPKRAS RGPVTAGTAA AVFGNLAGGS PDWPLNEFFG FADFSSGFGF  240
AENGTSKADS GKIGSMDGSP NGGRSSSSSS SSSAAAAAAG GGQDFFGQVP EVHWAVPELP  300
SPPTASGLHW QRDPRYGGGA TDASAVFVPD ISSPENPFRC FAAAGAGDHT MKRRRRC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242176	0.0	AK242176.1 Oryza sativa Japonica Group cDNA, clone: J075159I15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630321.1	0.0	B-box zinc finger protein 22
TrEMBL	A0A0E0FI74	0.0	A0A0E0FI74_ORYNI; Uncharacterized protein
STRING	ONIVA01G08670.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1794	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	5e-30	light-regulated zinc finger protein 1