PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G07860.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 618aa    MW: 65403.1 Da    PI: 7.7324
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G07860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30275334159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  ONIVA01G07860.1 275 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 334
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-32260334IPR003657WRKY domain
SuperFamilySSF1182903.01E-27268335IPR003657WRKY domain
PROSITE profilePS5081128.311270336IPR003657WRKY domain
SMARTSM007743.4E-37275335IPR003657WRKY domain
PfamPF031062.9E-27276334IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MIKGDSKQLA SMYMKEEMIK GERQLGTHED RLKDEVIKDG DKISDGNFFK SLQNISSTKE  60
EVCSPGPIER SCMDSSLLNM KAQNKGQDDK LESTRAEMGE VREENERLKT LLSRISHDYR  120
SLQTHFYDVL QQGRAKKLPD SPATDIEEPE FVSLRLGTST SKCKKEDKST TSSEVKGSTE  180
DFLKIKGGLS LGLSDCRVDA NNSEKVQPDV MTLSPEGSFE DARDDTAETT EQWPPSKMLK  240
NLRSVGAEAE DDIAPQPQVK KARVSVRARC DAPTMNDGCQ WRKYGQKIAK GNPCPRAYYR  300
CTVAAGCPVR KQVQRCADDM SILITTYEGT HNHPLSVSAT AMASTTSAAA SMLISGSSST  360
SLAAYPAASP ALTFDASSKP PLIGGRPFFL PTAAAAAITS TPSYPTITLD LTSPAAAAAT  420
SSHAAFSLSN RFSHTRYPST GFTFSGSGPS TAPWPGYLSY GASLSAHPYN GGGGKSSSSF  480
EAALSSINGS RQQGGGSAPL YQMQQKAAAP PPPSVITDTI AKAITADPSF HTALAAAITS  540
YVGKKGSPPA TGGEDSKVGL KWGEHLGLGL THSSPSTATM AAVAASSSSQ MFLQPSLGLS  600
GSTTSASTSP VANREQAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-202753351776Probable WRKY transcription factor 4
2lex_A5e-202753351776Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643468.10.0probable WRKY transcription factor 72 isoform X1
TrEMBLA0A0E0FHW10.0A0A0E0FHW1_ORYNI; Uncharacterized protein
STRINGONIVA01G07860.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-64WRKY DNA-binding protein 72