PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G07440.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 464aa    MW: 47016.5 Da    PI: 5.0346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G07440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.3e-07358398954
                      HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  ONIVA01G07440.1 358 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 398
                      69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-13355409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-11355403No hitNo description
Gene3DG3DSA:4.10.280.109.0E-11357407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-5358398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDRGFNEMIL SESVWNGGGG GGGGDGDGGA VVLPPEVGGV NAVDGSGMTM LERLVLDEAL  60
AAAILELQGI QAPGCGGGGC KVAVVPPPTA GDGGVEAAVA FAAMATGTPA YADVDADVLQ  120
RQRQHHHRHQ GAMGMAAEYD VAPATPAVTL SAVSPPPPPP AFATAAASVD GGGAMDATVF  180
SGIGNDDVVD AVSATVAMTT SQCERVRGGG GGGGCGRKQR RPGRKRKASE PTAAAAAADM  240
SSQDNPLCSL LASNTAGADG GIQIAFSTSA PASKRAKPSL SSSSSSISFD GRGPGGNCGG  300
GGDDDPLYEP DTEALAQVKE MIYRAAAMRP VTLGAEDAGE RPRRRNVRIS SDPQTVAARQ  360
RRERISERLR VLQKLVPGGA KMDTASMLDE AANYLRFLKS QIRELQTLDR RNYPNAAMSI  420
NTAAATTMAT SSSPTYNNSN AAMPAFAFPE TLGCGGGGGV EQLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358363RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629736.10.0transcription factor LATE FLOWERING-like
RefseqXP_015629741.10.0transcription factor LATE FLOWERING-like
TrEMBLA2WRJ20.0A2WRJ2_ORYSI; Uncharacterized protein
STRINGONIVA01G07440.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-34bHLH family protein