PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G07190.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 474aa    MW: 49891 Da    PI: 7.1526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G07190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.7e-12289334555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR+++N++f  L+ +lP+       K +K +iL +A eY+ksL+
  ONIVA01G07190.1 289 HMISERKRREKLNDSFLALKAVLPPG-----SKKDKTSILIRAREYVKSLE 334
                      8899********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.284284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-16286352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.00E-13286338No hitNo description
Gene3DG3DSA:4.10.280.108.7E-16288352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-9289334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-12290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MEDCSSWIHG YANANATAGN NGFMCGYAAS CSPVEFQQQQ QLVGSQIEHH LNQASLICNL  60
FDQETMHKIK EILGFNLVGV AFYYGMQISM QMGMDDESAV YDGASMVDDL LMASSSPHHH  120
AGAGSFQYSS PTSSSASFRS ASVSCSPESS AAATTHFLGP PAPSAAAAGF HYPEVSSQAP  180
LPLPLPPYEP QHGQYTTVLS PPPPAPELPA TTTPATGGAF RRYARHLRPR RLPKPGGCGQ  240
RMFKTAMSVL TKMHVAATYN RQYYYQQAAA AAASASAAEA PPSGNQLQHM ISERKRREKL  300
NDSFLALKAV LPPGSKKDKT SILIRAREYV KSLESKLSEL EEKNRELEAR LASRPAAAAA  360
KNDKGETAAA PAPEAGDETK RKDLVEIEVT TSGGGAGAAD AAAAAGGDQE TCTLNVDLRG  420
GGGGGGMSTT DVVLRTLQCL REQIGDGASL VAMSTSAGSG GRPPRANLTL QLKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292297ERKRRE
2293298RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029640.0AK102964.1 Oryza sativa Japonica Group cDNA clone:J033115I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626911.10.0uncharacterized protein LOC4327325
TrEMBLA0A0E0FHM60.0A0A0E0FHM6_ORYNI; Uncharacterized protein
STRINGONIVA01G07190.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-16bHLH family protein