PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G07170.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 307aa    MW: 32658.8 Da    PI: 4.7984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G07170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.3e-1395139655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI+ Lq
  ONIVA01G07170.1  95 ILMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIQRLQ 139
                      579*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7789138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1792154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.82E-1393143No hitNo description
PfamPF000101.7E-1094139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-1795155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1695144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550219.61E-5231289No hitNo description
CDDcd048730.00188232298No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDAEMAMGES FAYYWETQRY LESEELDSMY LPTQDDSNYE SSSPDGSHSS SAPAPAAVGG  60
DAAAAVAGSG GGTMTMMMGG GGGGGDDAGG ANKNILMERD RRRKLNEKLY ALRSVVPNIT  120
KMDKASIIKD AIEYIQRLQA EEQQMLREVA ALESAAAASA SPAAANPFAG LGADEEHEYG  180
HHHPSSSSER TKKVKRALSV SSISDALLAA AAPAPPVEIQ ELRVSEVGDR VLVVSVTCSK  240
RRDAMARVCR ALEELRLRVI TANITSVAGC LMHTLFVEVD HMDSVQMKQM VEAALSQLVA  300
TGSPLSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422100.0AK242210.1 Oryza sativa Japonica Group cDNA, clone: J075170K16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634154.10.0transcription factor bHLH35
TrEMBLA0A0E0FHM10.0A0A0E0FHM1_ORYNI; Uncharacterized protein
STRINGONIVA01G07170.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.14e-46bHLH family protein