PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G07090.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 360aa    MW: 37742.1 Da    PI: 7.1516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G07090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13181227455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++N++f  L+ +lP+       K +Ka+iL +A e+IksL+
  ONIVA01G07090.1 181 QHTMSERKRREKLNDSFVALKAVLPTG-----SKKDKASILIRAREHIKSLE 227
                      599***********************6.....499***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.96E-15175231No hitNo description
PROSITE profilePS5088815.25177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-17177245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-17180245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-11181227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-14183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146864.11E-4218246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDSSSWIHGY TNANATGANS GFMCGYAASP VEFPQQQQLI SMQMGMDDES AVYDGASMVG  60
DLLMASSSAH HAGAGSFQYS SSTTSSSASF RSASVSCIPE SSAAAAPELP AATGGAFSRY  120
ARHLRPRRPP KPGACGQRMF KTAMSVLANM HVAATYRRQY YYQQAAAAEA AAAPPSDNQL  180
QHTMSERKRR EKLNDSFVAL KAVLPTGSKK DKASILIRAR EHIKSLESKL SELEEKNREL  240
EARLASRPAA KNDKGETAAA EAGDETKRED LVEIEVTTTS GGSGVADAAA TGGDQETCCT  300
LNVDLRGGGG GGMSTTDVVL RTLQCLREQI GDGASLVAMS TSAGSGGRPP SANLTLQLKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190ERKRRE
2186191RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879409.10.0uncharacterized protein LOC107280684 isoform X2
TrEMBLA0A0E0FHL30.0A0A0E0FHL3_ORYNI; Uncharacterized protein
STRINGONIVA01G07090.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-14bHLH family protein