PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G07080.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 347aa    MW: 37459.8 Da    PI: 8.418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G07080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12251297455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++N++f  L+ +lP+       K +K +iL +A eY+ksL+
  ONIVA01G07080.1 251 QHTMSERKRREKLNDSFVALKAVLPPG-----SKKDKTSILIRAREYVKSLE 297
                      599**********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.53E-14245301No hitNo description
SuperFamilySSF474591.06E-16245314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.665247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-13250295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-10251297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1706.7E-5296316No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDSGGWIVHG YTNGATATGA GNHGFTCGYA ASSCGSWEFE QREQQFISSQ IQHRVGLINY  60
DVQISMHLSM DDDDDQSAVY GAAMVDDLLT PSPSTHHAVA AAAAGSFPSS SSSSASFRSA  120
SVSYSPDTSS SAAAAAATGF YPELSSQVAP LLPPPPLVRN EPQPGRYTAG LPPPPPPPVT  180
GGAFRRYARH LGPRRAPKPG ACGQRMFKTA MSALAKMHME TTYRRRQYYY QQAAAAAEAA  240
PPPPSGNNQL QHTMSERKRR EKLNDSFVAL KAVLPPGSKK DKTSILIRAR EYVKSLESKL  300
SELEEKNREL KARLSTRPDD TKNDEEEVAA PPEAGGEVKR EDPMTYK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255260ERKRRE
2256261RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880866.11e-138putative transcription factor bHLH041
TrEMBLA0A0E0FHL20.0A0A0E0FHL2_ORYNI; Uncharacterized protein
STRINGONIVA01G07080.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-17bHLH family protein