PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G07020.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 536aa    MW: 57662.8 Da    PI: 9.2275
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G07020.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33.2e-0692114123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C++Cgk F r  nL+ H r H
  ONIVA01G07020.2  92 YVCEICGKGFQRDQNLQLHRRGH 114
                      9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-584141No hitNo description
SMARTSM003550.006992114IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-692114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.80192114IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SMARTSM0035544134164IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.58E-7164218No hitNo description
SMARTSM0035528169190IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.3E-4189220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355160200220IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MPVVTLQAAG RIQEKFVQMM LKDLAEIQQQ QLLAAAEENM SNLTSASGDQ ASVSSHPAPP  60
PAKKKRSLPG NPDPEAEVIA LSPRTLMATN RYVCEICGKG FQRDQNLQLH RRGHNLPWKL  120
KQRNPKEVVR KKVYVCPEAG CVHHDPARAL GDLTGIKKHF SRKHGEKKWK CDKCSKRYAV  180
HSDWKAHSKH FCRKHGEKKW KCDRCGKRYA VHSDWKAHSK VCGTREYRCD CGTLFSRRDS  240
FITHRAFCDA LAEESARAVT AAAAVAGQQQ HGGGMLFSQV ADVLDHQAAM AMGGHGLMQE  300
LCLKREQQQQ QQQFAPSWLT AQQQQQQLEA MAGAGNPAAM YGSARLDQEF IGSSTPESGG  360
AQQAGLSFGF SSTSSAPPHP AASSAHMSAT ALLQKAAQMG ATLSRPSSHA HMAPVAAAST  420
HNSSSSAATT NAPPPPPTSN VSSTCVGAGG YGLAFEASHF IAADESSRGA RSDRDTGNGV  480
AGAGNDGLTR DFLGLRAFSH GNIMSMAGFD PCMSTTSASS AAPYDHHHHS NKPWHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-32196257364Zinc finger protein JACKDAW
5b3h_F2e-32196257364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118131KLKQRNPKEVVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1056630.0AK105663.1 Oryza sativa Japonica Group cDNA clone:001-200-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622491.10.0protein indeterminate-domain 7
TrEMBLA0A0E0FHK20.0A0A0E0FHK2_ORYNI; Uncharacterized protein
STRINGONIVA01G07020.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-97indeterminate(ID)-domain 11