PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G06940.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 873aa    MW: 98083.2 Da    PI: 8.4076
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G06940.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.2e-094678337
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                      W+++E  ++++a +++G++ Wk++++ +g g+++
  ONIVA01G06940.2 46 QWSKDELMRFYEAYRRHGKN-WKKVSASVG-GKSA 78
                     6*****************99.*********.9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-84289IPR009057Homeodomain-like
PROSITE profilePS5129310.914299IPR017884SANT domain
Gene3DG3DSA:1.10.10.607.2E-44681IPR009057Homeodomain-like
PfamPF002492.7E-74679IPR001005SANT/Myb domain
CDDcd001671.37E-44778No hitNo description
PfamPF065843.0E-27485579IPR033471DIRP domain
SMARTSM011351.3E-25485582IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MGPAKGSRTI TKITIKGYDD RQHDEDPNSS SKVKLKKRKM SDLGPQWSKD ELMRFYEAYR  60
RHGKNWKKVS ASVGGKSADT VEALYSVHRT FLSLPEREGT AMGFVALVTG HHNVSDESKS  120
HKGSDQTVRA SGKVRKREAT GQKEKEAPHA HRSYHERRTS GLSSFKKRYY GELVKNITRH  180
PSGKRTPRVP VIFPADMNVA HAGIQETENA INCTKKASGA TNNELECSSH GSPGISESAK  240
FVQGQTFLEA KGTGSLKKRR IEQSMEQGQT IKDEHETAMV AKEGNDLTKY QRLTNLFSPD  300
EMLVLDVLES LVTVPSKISE PKINIPSGTL GRDDSALSHR REEGPSVKRS KQGKQVGECS  360
ASKTRNKRRK KLIAEEVPTE GVTSNHLDLP EERQVDATEC ALNSDLERGT VDLPESTANI  420
STKIPDLPSQ LKPEINMSRR SKRKSKSPCG SKYVVCNGAD NLQARRLQHC LSSESLRRWC  480
TYEWFYSAVD YPWFMDNEFV NYLNFANLSH LSRLTRSEWS TIRSSLGKPR RFSDHFLAAE  540
KDKLENYRKK VRQYYALLSE DSWDSLPPDL ARPFSIGQQD RYNVQFDRPD LGVDEVKDTD  600
CMPVNWLDNL PDDLKKRSFL SNNSHNRVEV EQIPKLTSKE NWDHISGEAE PSKTMHITSD  660
EQVEVLLSKS IFKKHYDHSL SIHGQVEIAV DIERLSNKST SGNCGPLQPL QSVDDNVRSR  720
GLSEHRNGHN DELDSYITSF VQMSLAQAKQ MVDEAMKEIS ENGKSSLEET GISNEATDCK  780
GPEPESAANS ELPRNLIFNC IATLLAIKHF SEGRHPPPNI AGVLERACLM LRPSCAENLP  840
IYNEIENFIA VIKNQILALV PSASSNARLP MYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344351PSVKRSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0644720.0AK064472.1 Oryza sativa Japonica Group cDNA clone:002-110-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619153.10.0protein ALWAYS EARLY 2 isoform X2
TrEMBLA0A0E0FHJ30.0A0A0E0FHJ3_ORYNI; Uncharacterized protein
STRINGONIVA01G06940.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.22e-51DNA binding