PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G06080.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 321aa    MW: 34498.8 Da    PI: 10.2824
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G06080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.4e-32143201159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  ONIVA01G06080.1 143 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 201
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-33128201IPR003657WRKY domain
SuperFamilySSF1182902.09E-28135202IPR003657WRKY domain
PROSITE profilePS5081129.356138203IPR003657WRKY domain
SMARTSM007749.8E-37143202IPR003657WRKY domain
PfamPF031066.1E-25144200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MFPSPGRAVM ALGHHGAARQ PPTTMAAAAS SSTTSAAAAP ATATTTVAFS FQHPTPTPSC  60
EEGDHRGRPQ MGNKGEAAAA MGAMGINDAG NNTAAAAAAQ HHLGVGAVRM KKVGGGGGGG  120
GKARRKVREP RFCFKTMSDV DVLDDGYKWR KYGQKVVKNT QHPRSYYRCT QDNCRVKKRV  180
ERLAEDPRMV ITTYEGRHVH SPSRDDDDAA RASAEMTFIW NVPYGALLNS YGIPHFMPSP  240
STHASHLPPR GQLVASVDAC GPSDADRIFP LRSTARETRS RENINSSDLM DLSAIAIAHC  300
ISTKQPNHKV GASRERKKER Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-25134200874Probable WRKY transcription factor 4
2lex_A2e-25134200874Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418530.0AY341853.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632226.11e-122uncharacterized protein LOC4325330 isoform X1
TrEMBLA0A0E0FH820.0A0A0E0FH82_ORYNI; Uncharacterized protein
STRINGONIVA01G06080.21e-177(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-46WRKY DNA-binding protein 13