PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G04110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 291aa MW: 32582.8 Da PI: 6.5129 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.4e-18 | 32 | 76 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE+e+++da ++G + Wk+I +++g ++t q++s+ qky ONIVA01G04110.1 32 RERWSEEEHERFLDALIMYGRD-WKKIEEHVG-TKTTIQIRSHAQKY 76 78******************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.72E-18 | 26 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.769 | 27 | 81 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-9 | 29 | 83 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.3E-18 | 30 | 79 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.3E-12 | 31 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 32 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.67E-10 | 34 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MDRNTNNNSN SSSSSEMPGK KARKPYTITK PRERWSEEEH ERFLDALIMY GRDWKKIEEH 60 VGTKTTIQIR SHAQKYFLKV QKMGLAAGLP PQYPRRRLVM QQQQSSPAGS SSVAAQAILH 120 GQPQCLPPHH NVAVQSSIDM QNLEWASTSG AAAWGDHHGL IEPTAAFDSF PGESSFMGAA 180 SFSNMSMDWT GTTSEMVTAS IVQDETIELP LSPDDMQFAQ VYRFIGDIFD PDSPCPVETH 240 LQKLKNMDVI TVKTILLVLR NLEDNLLSPQ FEPIRRLLST YDPNRGLSGH L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106969 | 0.0 | AK106969.1 Oryza sativa Japonica Group cDNA clone:002-119-G02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646001.1 | 0.0 | protein REVEILLE 8 | ||||
TrEMBL | A0A0E0FGG7 | 0.0 | A0A0E0FGG7_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G04110.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 3e-51 | MYB_related family protein |