PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G02210.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 339aa    MW: 36672.8 Da    PI: 4.5185
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G02210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63e-13115158149
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaa 49 
                      ++y+GVr +k +g+W+AeIr  +     +  r +lg+f+ta+ A +a+ + 
  ONIVA01G02210.1 115 TCYRGVRLRK-WGKWAAEIRNpF-----TgHREWLGTFDTADAASAAY-QS 158
                      68******99.**********55.....45999*******55555555.43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-8115157IPR001471AP2/ERF domain
PROSITE profilePS5103217.148116175IPR001471AP2/ERF domain
SMARTSM003804.4E-14116170IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-14116165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-18117167IPR001471AP2/ERF domain
PRINTSPR003674.6E-8117128IPR001471AP2/ERF domain
CDDcd000181.97E-14117148No hitNo description
PRINTSPR003674.6E-8139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAPSKQQQQM LLKKVMAKKP KTKRLSGFGL KPSAAFSRPH VPSAAASLQL SRRVRVVFED  60
PDATDSDSDD DEDAGAASKK RYFELFIGKP ASSTKQASPA STVAAYANIG KVGSTCYRGV  120
RLRKWGKWAA EIRNPFTGHR EWLGTFDTAD AASAAYQSAS RNFAEEKRRR GVASSASPAS  180
SATPTPTASS SSSTSAAPFA HPSPSSVLEA TKPAPKPESP PLPEQAATPL LVEATNETAE  240
LPDDPEFYKD ILRGLQLPDI DPMDFRAGLD ALDISDVPAY MNGEQDVLFT EDMLLGDFAE  300
EDDLDLDDIG DDFCEDFPEI PSGYDFGRGD MFRQVDFCV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616539.10.0ethylene-responsive transcription factor ERF118
TrEMBLA0A0E0FFS50.0A0A0E0FFS5_ORYNI; Uncharacterized protein
STRINGONIVA01G02210.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.31e-11related to AP2 2