PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G02110.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 307aa    MW: 32368.5 Da    PI: 7.1533
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G02110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260994.5e-314106198
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q
  ONIVA01G02110.1   4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQANATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQLCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallk 98 
                      +++e +l++
  ONIVA01G02110.1  98 SAVESVLRG 106
                      **9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381558.7E-1211304IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.5773109IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQANATVF LAKFYGRAGL INLITAGPEH  60
VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQSAV ESVLRGMPIA QPPPSATAVP  120
PLPTCDIRHV GARRGDVHGA AAGPVADLHR LDISSRAKFK RPGGGAAAAH RSDHAAFELV  180
FSKPAAAMAV DVIRQAQPLN WAPGALSHES ASHDAAPPES EGHSNDTADT VDGSHVSQSE  240
PEPRATSAAT EVHDTGLDLT LGLPPPPPPV QKTEPADSDG GSQQQHDHRK EKPVELGLAI  300
STSVAAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0025380.0AP002538.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408F06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644470.10.0LOB domain-containing protein 40
SwissprotQ9M8864e-72LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0E0FFR50.0A0A0E0FFR5_ORYNI; Uncharacterized protein
STRINGONIVA01G02110.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-69LOB domain-containing protein 41