PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G00780.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 290aa    MW: 30143.8 Da    PI: 7.834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G00780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-09207250755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ + RR+ri +++  L++l+P+      +K++ +++LekA++Y+k Lq
  ONIVA01G00780.1 207 AAAKVRRERISERLKVLQDLVPNG-----TKVDLVTMLEKAINYVKFLQ 250
                      56699*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-14198260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-12200254No hitNo description
PROSITE profilePS5088814.932200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-11205258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6208250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAAQASSKRG MLLPREAVLY DDEPSMPLEI LGYHGNGVGG GGCVDADYYY SWSGSSSSSS  60
SSVLSFDQAA VGGGGGGCAR QLAFHPGGDD DDCAMWMDAA AGAMVENTSV VAGGGNNYCH  120
RLQFHGGAAG FGLASPGSSV VDNGLEIHES NVSKPPPPAA KKRACPSGEA RAAGKKQCRK  180
GSKPNKAASS SSPSPSPSPN KELPQSAAAK VRRERISERL KVLQDLVPNG TKVDLVTMLE  240
KAINYVKFLQ LQVKVLATDE FWPAQGGKAP ELSQVKDALD AILSSQHPNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085870.0AK108587.1 Oryza sativa Japonica Group cDNA clone:002-146-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643698.11e-177transcription factor bHLH83
TrEMBLA0A0E0FF710.0A0A0E0FF71_ORYNI; Uncharacterized protein
STRINGONIVA01G00780.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.14e-46ROOT HAIR DEFECTIVE6