PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G00550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 565aa MW: 60897.1 Da PI: 8.7635 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26 | 1.6e-08 | 28 | 78 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54 +e+ErrRR++++ +L +l+P+ + k ++ + L +A YIk+L ONIVA01G00550.1 28 KEMERRRRQDMKGLCVKLASLIPNeHCsKSKGATRTQLGSLDEAAAYIKKL 78 79**********************7666777777***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.36 | 22 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-11 | 26 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-5 | 28 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-7 | 28 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-9 | 28 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF12620 | 3.6E-18 | 426 | 473 | IPR022256 | Domain of unknown function DUF3778 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MDQEKADGGG RRRRSSGSGA SSTAAERKEM ERRRRQDMKG LCVKLASLIP NEHCSKSKGA 60 TRTQLGSLDE AAAYIKKLKE RVDELHHKRS MMSITSSRCR SGGGVPAAAA GQSTSGGGGE 120 EEEDMTRTTA AAAVVEVRQH VQEGSLISLD VVLICSAARP VKFHDVITVL EEEGADIISA 180 NFSLAAHNFY YTIYSRAFSS RIGIEASRIS ERLRALAMTT EYTALATWSK DTYIAPTSKF 240 GVGSGVELSS PWVPVWLDAA AGGGGGDARS EDRWMNRRKR LVPCGGGGGY IVVGDREKPA 300 PCGGASCFVV GVRDVTVPMN RQKKLAPYGS VSGFVIGVRE VAAPDGGGSF LRPASPGQAI 360 AQSLLLVVLD CPLARWRRFC RCMLECFLCH GSISQVSQDF SPPFPHVDPR RQQFVCHHSS 420 ALVGLGIWMW APSSSVFPTS SFHAGFVVRV ELTLLRFNDE LRGLLLLSPV MLPQNLRLSS 480 KPPFCAVFVE ATGWGLPVCQ ACCTPKEAQG CIRHGIAAAP CRCAPSLQCG FITNFPVLSK 540 RMVLCFLLIF CNVLGFIPVN SVALY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002845 | 0.0 | AP002845.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0482C06. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0FF38 | 0.0 | A0A0E0FF38_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G00550.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10586.1 | 2e-13 | bHLH family protein |