PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G00550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 565aa    MW: 60897.1 Da    PI: 8.7635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G00550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-082878654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS
              HLH  6 nerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54
                     +e+ErrRR++++    +L +l+P+  + k ++   +    L +A  YIk+L
  ONIVA01G00550.1 28 KEMERRRRQDMKGLCVKLASLIPNeHCsKSKGATRTQLGSLDEAAAYIKKL 78
                     79**********************7666777777***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.362278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-112691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-52878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-72884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-92895IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF126203.6E-18426473IPR022256Domain of unknown function DUF3778
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MDQEKADGGG RRRRSSGSGA SSTAAERKEM ERRRRQDMKG LCVKLASLIP NEHCSKSKGA  60
TRTQLGSLDE AAAYIKKLKE RVDELHHKRS MMSITSSRCR SGGGVPAAAA GQSTSGGGGE  120
EEEDMTRTTA AAAVVEVRQH VQEGSLISLD VVLICSAARP VKFHDVITVL EEEGADIISA  180
NFSLAAHNFY YTIYSRAFSS RIGIEASRIS ERLRALAMTT EYTALATWSK DTYIAPTSKF  240
GVGSGVELSS PWVPVWLDAA AGGGGGDARS EDRWMNRRKR LVPCGGGGGY IVVGDREKPA  300
PCGGASCFVV GVRDVTVPMN RQKKLAPYGS VSGFVIGVRE VAAPDGGGSF LRPASPGQAI  360
AQSLLLVVLD CPLARWRRFC RCMLECFLCH GSISQVSQDF SPPFPHVDPR RQQFVCHHSS  420
ALVGLGIWMW APSSSVFPTS SFHAGFVVRV ELTLLRFNDE LRGLLLLSPV MLPQNLRLSS  480
KPPFCAVFVE ATGWGLPVCQ ACCTPKEAQG CIRHGIAAAP CRCAPSLQCG FITNFPVLSK  540
RMVLCFLLIF CNVLGFIPVN SVALY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028450.0AP002845.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0482C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0FF380.0A0A0E0FF38_ORYNI; Uncharacterized protein
STRINGONIVA01G00550.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.12e-13bHLH family protein