PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G00330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 388aa MW: 41679 Da PI: 8.4981 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.4 | 6.9e-05 | 275 | 313 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq ONIVA01G00330.1 275 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 313 7788899*********998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.528 | 263 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-11 | 273 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.18E-5 | 273 | 317 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.6E-9 | 277 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MMASSSSSSS LCDNHLLQDD LIPWPSMPFA PAPNTFGLNH QWSQPPMLSS STDQLSSYEL 60 ESLQSVESQL AAAAPPTLSP HLQAHQLSTV LMMQELGFQW SSCAAPADQH SIASSTNNNS 120 NVMMNEEELR PRPDQSLISN PRSCSATTLL PPPHLHLDGA VLPSINVSRL QKLAAGDEPP 180 QICCKRQAAA AAVVGHSSIR DEHVPCPYAG PPAHLIQGPS NTLQMKRNTN AAAQGRGGRH 240 GSSTEHRSST ALPPSSKKPR LESHSSSMLP SFKVRKEKLG DRIAALQQLV SPFGKTDTAS 300 VLMEAIGYIK FLQDQVETLS GPYLRSSKNS KKLACRAAQQ QRKGTSNGGD AAAKLDLRSR 360 GLCLVPLSCT SYVTNENGVW PPPNFRGN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119493 | 0.0 | AK119493.1 Oryza sativa Japonica Group cDNA clone:001-134-D09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627200.1 | 0.0 | uncharacterized protein LOC4326301 | ||||
TrEMBL | A0A0E0FF00 | 0.0 | A0A0E0FF00_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G00330.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7240 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 6e-46 | bHLH family protein |