PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI12G14510.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 364aa MW: 40508.1 Da PI: 7.3961

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI12G14510.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.2	5.1e-47	35	180	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekew.yfFskrdkkyatgkrknratk 79 pGfrFhPtd+elv +yL++kve+k++++ ++ike+diyk++PwdLpk +++a eke+ yfF+ r +ky+++ r+nr+t OMERI12G14510.1 35 FPGFRFHPTDQELVGFYLTRKVEKKPFSI-DIIKEIDIYKHDPWDLPKvshgvalqgssssstTTAAAEKECgYFFCLRGRKYRNSIRPNRVTG 127 69*************************.99***********76899999999888764444667778***************** PP NAM 80 sgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 sg+Wkatg dk+++++ g +glkk+Lv+y+g+a +g+ktdW+mhe+rl OMERI12G14510.1 128 SGFWKATGIDKPIYDSsslaAGDCIGLKKSLVYYRGSAGRGTKTDWMMHEFRL 180 ***********866666666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	49.034	34	205	IPR003441	NAC domain
SuperFamily	SSF101941	4.71E-49	34	205	IPR003441	NAC domain
Pfam	PF02365	4.5E-23	36	180	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MEEEKRLERI IKEIDSPISP GGGAALLAED DDLVFPGFRF HPTDQELVGF YLTRKVEKKP 60 FSIDIIKEID IYKHDPWDLP KVSHGVALQG SSSSSTTTAA AEKECGYFFC LRGRKYRNSI 120 RPNRVTGSGF WKATGIDKPI YDSSSLAAGD CIGLKKSLVY YRGSAGRGTK TDWMMHEFRL 180 PSSISDSDHL QDASETWTIC RIFKRSMTYT KGRAAAAASM NKRISHQLQH IHQQQQQFYY 240 HEVVHDHHHR RLHLQHYAGS ASMAAAAANS VVDVIDHSSD AETTTRSHSH SQSHLVADIR 300 HLQSPFMLDF HAGTASSSSS TAAAGWSEVM SFSRDGGSSS GSSWDELGRI MDISTNSANN 360 NYYL

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MEEEKRLERI IKEIDSPISP GGGAALLAED DDLVFPGFRF HPTDQELVGF YLTRKVEKKP  60
FSIDIIKEID IYKHDPWDLP KVSHGVALQG SSSSSTTTAA AEKECGYFFC LRGRKYRNSI  120
RPNRVTGSGF WKATGIDKPI YDSSSLAAGD CIGLKKSLVY YRGSAGRGTK TDWMMHEFRL  180
PSSISDSDHL QDASETWTIC RIFKRSMTYT KGRAAAAASM NKRISHQLQH IHQQQQQFYY  240
HEVVHDHHHR RLHLQHYAGS ASMAAAAANS VVDVIDHSSD AETTTRSHSH SQSHLVADIR  300
HLQSPFMLDF HAGTASSSSS TAAAGWSEVM SFSRDGGSSS GSSWDELGRI MDISTNSANN  360
NYYL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-43	36	205	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-43	36	205	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-43	36	205	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-43	36	205	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-43	36	205	22	168	NAC domain-containing protein 19
3swm_B	3e-43	36	205	22	168	NAC domain-containing protein 19
3swm_C	3e-43	36	205	22	168	NAC domain-containing protein 19
3swm_D	3e-43	36	205	22	168	NAC domain-containing protein 19
3swp_A	3e-43	36	205	22	168	NAC domain-containing protein 19
3swp_B	3e-43	36	205	22	168	NAC domain-containing protein 19
3swp_C	3e-43	36	205	22	168	NAC domain-containing protein 19
3swp_D	3e-43	36	205	22	168	NAC domain-containing protein 19
4dul_A	2e-43	36	205	19	165	NAC domain-containing protein 19
4dul_B	2e-43	36	205	19	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619497.1	0.0	NAC domain-containing protein 41 isoform X2
TrEMBL	A0A0E0FEM7	0.0	A0A0E0FEM7_9ORYZ; Uncharacterized protein
STRING	OPUNC12G17870.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	6e-74	NAC domain containing protein 42