PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G14040.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 829aa    MW: 90141.6 Da    PI: 6.4286
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G14040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-183289457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OMERI12G14040.1 32 YVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 89
                     6789****************************************************97 PP
2START51.82.4e-17180276297
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ ++++ vi +g  g+++l
  OMERI12G14040.1 180 IAEETLAEFMSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDIIHVIPTGngGTIEL 272
                      68999*****************************************************.8888888888******************9999999 PP

                      EEEX CS
            START  94 mvae 97 
                      ++++
  OMERI12G14040.1 273 IYMQ 276
                      8875 PP
3START652.2e-21277359125204
                      EEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
            START 125 ivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                      i+++S+++ +  p+   +++++Rae+lpSg+li+p+++g+s + +v+hvdl++++++++lr+l++s  + ++k++ a+l++ +
  OMERI12G14040.1 277 ICERSLTQSTGGPSgpnTPNFIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIR 359
                      899*****999999899*************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3052690IPR001356Homeobox domain
SMARTSM003896.3E-152894IPR001356Homeobox domain
CDDcd000863.93E-163191No hitNo description
SuperFamilySSF466891.97E-163193IPR009057Homeodomain-like
PfamPF000466.2E-163289IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-183389IPR009057Homeodomain-like
CDDcd146868.01E-683122No hitNo description
SMARTSM002343.1E-20179361IPR002913START domain
SuperFamilySSF559614.12E-25180362No hitNo description
PfamPF018521.6E-14180276IPR002913START domain
PfamPF018528.3E-19277359IPR002913START domain
PROSITE profilePS5084812.499277342IPR002913START domain
Gene3DG3DSA:3.30.530.201.9E-6281331IPR023393START-like domain
SuperFamilySSF559614.12E-5399483No hitNo description
SuperFamilySSF559614.12E-5513586No hitNo description
SuperFamilySSF559614.12E-5622632No hitNo description
PfamPF086708.0E-47686828IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MAAAAVGGRG ERLSSSSPTG AAAAPQVDAG KYVRYTPEQV EALERVYTEC PKPSSLRRQQ  60
LIRECPILSN IEPKQIKVWF QNRRCREKQR KEASRLQTVN RKLNAMNKLL MEENDRLQKQ  120
VSRLVYENGY MRTQLHNPSA ATTDTSCESV VTSGQHHQQQ NPAVLHPQRD ANNPAGLLAI  180
AEETLAEFMS KATGTAVEWV QMVGMKPGPD SIGIIAVSHN CSGVAARACG LVSLEPTKVA  240
EILKDRPSWY RDCRCVDIIH VIPTGNGGTI ELIYMQICER SLTQSTGGPS GPNTPNFIRA  300
EVLPSGYLIR PCEGGGSMIY IVDHVDLDAW SVPEVLRPLY ESPKILAQKM TIAALRHIRQ  360
IAHESSGEIP YGAGRQPAVF RTFSQRLSRG FNDAVSGFPD DGWSLLSSDG SEDITISVNS  420
SPNKLVGSHV SPNPLFSTVG GGILCAKASM LLQNVPPALL VRFLREHRSE WADPGVDAYS  480
AASLRASPYA VPGLRTSGFM GSQVILPLAH TLEHEEFLEV IRLEGHGFSH DEVLLSRDMY  540
LLQLCSGVDE NATSASAQLV FAPIDESFAD DAPLLPSGFR VIPLDTKMDG PSATRTLDLA  600
SALEVGPGGA SRASTDASGT CNRSVLTIAF QFSYENHLRE SVAAMARSYV RAVMASVQRV  660
AVAIAPSRLG PQIGMKHPPA SPEALTLASW IGRSYRAHTG ADIRWSDTED ADSPLALLWK  720
HSDAILCCSL KPAPMFTFAN NAGLDILETT LVNLQDISLE MILDDEGRKA LCSEFPKIMQ  780
QGFTYLPGGV CKSSMGRQAS YEQAVAWKVL SDDDAPHCLA FMLVNWTFM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021830.0AK102183.1 Oryza sativa Japonica Group cDNA clone:J033086M14, full insert sequence.
GenBankEU3687120.0EU368712.1 Oryza sativa Indica Group SKIP interacting protein 22 (SIP22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620816.10.0homeobox-leucine zipper protein HOX33
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLA0A0E0FEF60.0A0A0E0FEF6_9ORYZ; Uncharacterized protein
STRINGOMERI12G14090.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]