PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G14000.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 300aa    MW: 32457.6 Da    PI: 8.7551
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G14000.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-101361346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +WT+eE+  l+ +++++G g W+tI +          R+  ++k++w++
  OMERI12G14000.3 13 KWTAEEESALKAGIAKHGAGKWRTILKDPDfsnvlRYRSNVDLKDKWRN 61
                     7**********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.4E-51065IPR001005SANT/Myb domain
PROSITE profilePS500907.4911363IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.5E-121362IPR009057Homeodomain-like
SuperFamilySSF466893.98E-141367IPR009057Homeodomain-like
CDDcd116605.78E-191363No hitNo description
PfamPF002497.0E-71362IPR001005SANT/Myb domain
SuperFamilySSF467851.52E-15121201IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005267.3E-11122187IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.0E-14123194IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.123124192IPR005818Linker histone H1/H5, domain H15
PfamPF005383.5E-8129185IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MRRAGDGWPS AWKWTAEEES ALKAGIAKHG AGKWRTILKD PDFSNVLRYR SNVDLKDKWR  60
NMNVTVNASG ARDRVKAPVI KKPRSAPKHE GHSTSTAIAA VTSDGDDDVA EPVPLATSTS  120
SKRSLSRLDN IIVEAVRSLN EPTGSYKTAI ANYIEEQYWP PADFDHVLSS KLNDLTASGK  180
LIKVNRKYRI APSSSLSEGR SSKVVLLEDI KKEPTKLDRE DVAVLTKSQI DAELARMRTM  240
TAEEAAAAAA RAVAEAEAIM AEAEAAVREA EAAEADAVAA QAFAEAAMAT LKNRSSAKLD
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1180140.0AB118014.1 Oryza sativa Japonica Group bip127 mRNA for BRI1-KD interacting protein 127, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620817.10.0single myb histone 6
RefseqXP_015620818.10.0single myb histone 6
RefseqXP_025877961.10.0single myb histone 6
SwissprotC0HIA31e-101SMH6_MAIZE; Single myb histone 6
TrEMBLA0A0E0FEF10.0A0A0E0FEF1_9ORYZ; Uncharacterized protein
STRINGOMERI12G14040.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-57telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]