PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G13760.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 293aa    MW: 30517.4 Da    PI: 8.8686
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G13760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.59.8e-34421811111
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec...eaesss 79 
                      aag+kdrhsk+ T++g+RdRRvRls+++a+ f+d+qd+LG+d++sk+ieWL+++a +ai++l+++            ss+         +++++
  OMERI12G13760.1  42 AAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIEWLIRAAAAAIDALPSLdcsfalpgnaaaSSP----PppaADDAEV 131
                      6899*******************************************************************987654222....1232333333 PP

              TCP  80 ssasnsssg..................kaaksaakskksqksaasalnla 111
                      s++++s+s+                   ++++++ +k+ q+++a+   +a
  OMERI12G13760.1 132 STSETSKSSvlslanapcdnggafadlLHCSNTNGTKPLQQQQATLAYYA 181
                      33333333367777888888999999955555553333333333222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.6E-3244167IPR005333Transcription factor, TCP
PROSITE profilePS5136931.67845103IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEEVVVGGKE RKRPRGALVG GGGGATAATA AAWRTSRVAR AAAGGKDRHS KVVTSRGLRD  60
RRVRLSVPTA IAFYDIQDRL GVDQPSKAIE WLIRAAAAAI DALPSLDCSF ALPGNAAASS  120
PPPPAADDAE VSTSETSKSS VLSLANAPCD NGGAFADLLH CSNTNGTKPL QQQQATLAYY  180
AAAQSAHMAA PMSFEMMAMP PHLAFSQEQQ QHATVAAFDR GTLQSNASLW PPPPPPSQHP  240
FLLQRFAAAP AEVAGLPFFL AGGVGGAAAA PAATTNGGER RLQLWDFKEE RKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-2250104155Putative transcription factor PCF6
5zkt_B9e-2250104155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0004570.0BX000457.2 Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877606.11e-137transcription factor PCF8
SwissprotA2ZMR91e-144PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A0E0FEB80.0A0A0E0FEB8_9ORYZ; Uncharacterized protein
STRINGORGLA12G0161900.11e-137(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.23e-20TCP family protein