PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G13600.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 311aa    MW: 33639.2 Da    PI: 8.5731
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G13600.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.56.9e-31150206158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d+p+YVNaKQy +I++RR++Rak+e+e++l  k+rkpylheSRh hA+rR+RgsgGrF
  OMERI12G13600.2 150 DAPIYVNAKQYAAIIRRRHARAKAERENRL-VKARKPYLHESRHLHAMRRARGSGGRF 206
                      68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.1E-34148209IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.332149209IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.5E-23152174IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.7E-28152206IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860154174IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.5E-23183206IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006364Biological ProcessrRNA processing
GO:0048825Biological Processcotyledon development
GO:0090070Biological Processpositive regulation of ribosome biogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005525Molecular FunctionGTP binding
GO:0043022Molecular Functionribosome binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMSFNKSHEG FGQVAAVATL ASNGGGSLPW LLYGEPLGQG KPAMSPEGVV PRAQTPLDPP  60
PVPAMDRGVP EILNFSMVPG KGEKCSEHST TIALQSPFAE YNGCFELGLG QSVVPSNYPY  120
ADQHYGPLSP YGVRPTPSGR ILIPPNMPAD APIYVNAKQY AAIIRRRHAR AKAERENRLV  180
KARKPYLHES RHLHAMRRAR GSGGRFLNTK KEANGKTTGG GRKVMDIIIP PLCPAASPSS  240
EQCNPSSVSS LSGSEVSSIY EHEDMDHFHS FDHLRTHFFT PLPSLMDVEH GAGNPFKWTA  300
ASDGCCDLLK A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-17150212264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880320.0AB288032.1 Oryza sativa Japonica Group OsHAP2F mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK0737420.0AK073742.1 Oryza sativa Japonica Group cDNA clone:J033067G24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618449.10.0nuclear transcription factor Y subunit A-10
RefseqXP_015618450.10.0nuclear transcription factor Y subunit A-10
TrEMBLA0A0E0FE920.0A0A0E0FE92_9ORYZ; Uncharacterized protein
STRINGOMERI12G13560.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-29nuclear factor Y, subunit A10