PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI12G13160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LSD | ||||||||
Protein Properties | Length: 178aa MW: 18626.7 Da PI: 8.3928 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.4 | 5.6e-14 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGApsV+Ca+C++V OMERI12G13160.1 7 CHGCRNILLYPRGAPSVCCAVCHAV 31 ************************9 PP | |||||||
2 | zf-LSD1 | 48.3 | 1.6e-15 | 74 | 98 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A+sVRC++CdtV OMERI12G13160.1 74 CGGCRTLLMYTRNATSVRCSCCDTV 98 ************************9 PP | |||||||
3 | zf-LSD1 | 50.8 | 2.6e-16 | 112 | 136 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ OMERI12G13160.1 112 CGQCQTVLMYPYGAPSVKCAICNFI 136 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.0E-12 | 4 | 31 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.0E-11 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.4E-15 | 71 | 101 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.0E-12 | 74 | 98 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.6E-11 | 109 | 137 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.3E-14 | 112 | 136 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MQSQIVCHGC RNILLYPRGA PSVCCAVCHA VSSTAPSPGC KHSPEFAGSA EGLGRPDFIR 60 IGGFTGMDIA HLICGGCRTL LMYTRNATSV RCSCCDTVNL VRPVSSIAHL NCGQCQTVLM 120 YPYGAPSVKC AICNFITNTG PTTQSQNVTV VVENPMTVDA KGKLVSNVVV GVTTGGKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111837 | 1e-118 | AK111837.1 Oryza sativa Japonica Group cDNA clone:J023139G05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620418.1 | 1e-94 | protein LOL2 | ||||
Swissprot | Q2QMB3 | 9e-96 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A0E0FE18 | 1e-126 | A0A0E0FE18_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI12G13090.1 | 5e-99 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 3e-44 | lsd one like 1 |
Publications ? help Back to Top | |||
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