PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI12G12170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 349aa MW: 37315.3 Da PI: 8.8403 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 71.5 | 1.3e-22 | 85 | 129 | 2 | 46 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+h+ OMERI12G12170.1 85 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHM 129 9*****************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-19 | 83 | 129 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.74E-8 | 83 | 128 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-14 | 85 | 128 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MSTTTSSSSD EAATAAMAPD LSLHISPPSP RLELGLADDT AVVAAKTTTD DERRRRHHQP 60 IQTAHGFKKS SGGGGGGGKR SARAPRMRWT TALHAHFVHA VELLGGHERA TPKSVLELMN 120 VKDLTLAHMY RTVKGTDRSC VAGHGQASRE MSFLMRRGLV AEVDSFDGFN NNNNNMVNTT 180 SNNTTSSPSH QESSSCRIFR AEIWKGAAAA AHDHHDQEAA TAAALHHDQP RRRLDHIVAG 240 RPPPPPASSS GGGGGGDTMA SSLDWLLASR RQKQHDYGDH YDGDGGYYTA AHRGQAAAAM 300 SAAAAASGVV KDRRPSLEMS LGRQGWEITM EQRSSVESSS KELTLLKCL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109727 | 0.0 | AK109727.1 Oryza sativa Japonica Group cDNA clone:002-146-B09, full insert sequence. | |||
GenBank | AL954829 | 0.0 | AL954829.6 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618990.1 | 1e-144 | uncharacterized protein LOC4352677 | ||||
TrEMBL | A0A0E0FDM6 | 0.0 | A0A0E0FDM6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI12G12110.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3742 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.2 | 7e-29 | G2-like family protein |