PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI12G08550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 858aa MW: 94335.6 Da PI: 6.549 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.9 | 7e-22 | 146 | 266 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..........................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..........................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeF 68 f+k+lt sd++++g +++ +++a+e+ + ++ +++l+ +d++g +W++++i+r++++r++l++GW+ F OMERI12G08550.1 146 FCKTLTASDTSTHGGFSVLRRHADEClpplysffdrlivamplttlldqdmsQ--HPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVF 237 99***********************************************9544..445569********************************* PP HHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 69 vkangLkegDfvvFkldgrsefelvvkvfrk 99 v+a++L +gD ++F + +++el+v+v+r+ OMERI12G08550.1 238 VSAKRLVAGDAFIFL--RGENGELRVGVRRA 266 ***************..449999*****996 PP | |||||||
2 | Auxin_resp | 112.1 | 5.4e-37 | 291 | 373 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+s+seFvv+++ +e++lk++ s+GmRfkm fe+e+++e+r++Gt+vgv d+dp+ W +SkWrsLk OMERI12G08550.1 291 AWHAVNTGTMFTVYYKPRTSPSEFVVPRDLYEESLKRNHSIGMRFKMTFEGEEAAEQRFTGTIVGVGDSDPSGWADSKWRSLK 373 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.79E-36 | 139 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-39 | 139 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.58E-19 | 144 | 265 | No hit | No description |
Pfam | PF02362 | 3.4E-20 | 146 | 266 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.1E-21 | 146 | 267 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.138 | 204 | 267 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.4E-34 | 291 | 373 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.1E-11 | 717 | 815 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.837 | 730 | 814 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.89E-12 | 732 | 806 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 858 aa Download sequence Send to blast |
MAAAATASPV EGLTGGGGGG GGGVDGLFVE LWRACAGPLV TVPAVGERVF YLPQGHIEQV 60 EASTNQVAEQ QGAPLYNLPW KIPCKVMNVE LKAEPDTDEV YAQLTLLPEK QQDGNGSGNG 120 NASKDKVEEE EVVPPAATER PRVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLYSFFD 180 RLIVAMPLTT LLDQDMSQHP PTQELVAKDL HGVEWRFRHI FRGQPRRHLL QSGWSVFVSA 240 KRLVAGDAFI FLRGENGELR VGVRRAMRQQ ANIPSSVISS HSMHLGVLAT AWHAVNTGTM 300 FTVYYKPRTS PSEFVVPRDL YEESLKRNHS IGMRFKMTFE GEEAAEQRFT GTIVGVGDSD 360 PSGWADSKWR SLKVRWDEAA SVPRPDRVSP WQIEPANSPS PVNPLPAPRT KRARPNVLAS 420 SPDLSAVNKE VASKVMANSQ QNGLPRAFHS QENMNLRSRF GDSNELNTSQ KLTMWSSGSN 480 QEKNNASVQR ELGSQSWMQM RRPDGSSEIL SGFQPLKDTR NPLSSFPSQI SGNRSNKWNT 540 INVHYPDQNA NHNMYPGTWS LMPPNTGFGL NQQNYLMTPD ITLPQRSLNA KFGGNGAFTS 600 LRAHGIDQRS SGWLGHIEPS SHIDDASSSL IKPQPLVIDH NVQKAKGSSC MLFGISLDSP 660 AKPELLISPP SVAFDGKLQQ DALEEDECSD PSKTLKPLDG AQHDSATEKH QSCPDGTKNI 720 QSKQQNGSSR SCKKVHKQGI ALGRSIDLTK FTCYDELIAE LDQMFDFNGE LNSSSKNWMV 780 VYTDNEGDMM LVGDDPWNEF CNMVHKIFIY TREEVQKMNP GALNSRSEDS RSTSVERGLV 840 GEGLQGGLST PSLNSENC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-165 | 17 | 400 | 9 | 359 | Auxin response factor 1 |
4ldw_A | 1e-165 | 17 | 400 | 9 | 359 | Auxin response factor 1 |
4ldw_B | 1e-165 | 17 | 400 | 9 | 359 | Auxin response factor 1 |
4ldx_A | 1e-165 | 17 | 400 | 9 | 359 | Auxin response factor 1 |
4ldx_B | 1e-165 | 17 | 400 | 9 | 359 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK067061 | 0.0 | AK067061.1 Oryza sativa Japonica Group cDNA clone:J013091D19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620411.1 | 0.0 | auxin response factor 24 isoform X1 | ||||
Refseq | XP_015620412.1 | 0.0 | auxin response factor 24 isoform X1 | ||||
Swissprot | Q2QQX6 | 0.0 | ARFX_ORYSJ; Auxin response factor 24 | ||||
TrEMBL | A0A0E0FC61 | 0.0 | A0A0E0FC61_9ORYZ; Auxin response factor | ||||
STRING | OMERI12G08370.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|