PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI12G08420.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 257aa MW: 27780.3 Da PI: 10.0849 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144 | 8.3e-45 | 9 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrF+Ptdeelvv+yL++++ g++l+ + i++v+++ ++P+dL p +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+v OMERI12G08420.2 9 LPPGFRFRPTDEELVVHYLRRRALGSPLPPAVDIPDVRLLAHDPSDLiP--PGWSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKPVA 100 79*************************998556**************43..3447899************************************ PP NAM 94 sk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +vg+k++Lvfy+g+ p+g+ktdWvmheyrl OMERI12G08420.2 101 VPvaaaaptrTAVVVGMKRSLVFYRGKPPTGRKTDWVMHEYRL 143 99877777666666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-50 | 6 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.412 | 9 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-26 | 10 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
METTTAKKLP PGFRFRPTDE ELVVHYLRRR ALGSPLPPAV DIPDVRLLAH DPSDLIPPGW 60 SEQERYFFTC KEAKYVKGRR ANRATGAGYW KATGKEKPVA VPVAAAAPTR TAVVVGMKRS 120 LVFYRGKPPT GRKTDWVMHE YRLAGAGLAP CRRAADHPAR PAEGWVLCRV FRKKGSAAAS 180 TASPTADADD DDATTERADA AAAGVRFIDF FARADARRRR AASPVSSSCV TDASAEHCRE 240 QETTSRNGGA AAGDASD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-38 | 5 | 177 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-38 | 5 | 177 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-38 | 5 | 177 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-38 | 5 | 177 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-38 | 5 | 177 | 13 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-38 | 5 | 177 | 13 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243244 | 0.0 | AK243244.1 Oryza sativa Japonica Group cDNA, clone: J100046N20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618303.1 | 1e-143 | NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 1e-52 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A0E0FC47 | 0.0 | A0A0E0FC47_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI12G08230.1 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-50 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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