PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI12G08420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 291aa MW: 31397.9 Da PI: 11.022 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 143.6 | 1.1e-44 | 9 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrF+Ptdeelvv+yL++++ g++l+ + i++v+++ ++P+dL p +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+v OMERI12G08420.1 9 LPPGFRFRPTDEELVVHYLRRRALGSPLPPAVDIPDVRLLAHDPSDLiP--PGWSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKPVA 100 79*************************998556**************43..3447899************************************ PP NAM 94 sk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +vg+k++Lvfy+g+ p+g+ktdWvmheyrl OMERI12G08420.1 101 VPvaaaaptrTAVVVGMKRSLVFYRGKPPTGRKTDWVMHEYRL 143 99877777666666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-50 | 6 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.412 | 9 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-26 | 10 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
METTTAKKLP PGFRFRPTDE ELVVHYLRRR ALGSPLPPAV DIPDVRLLAH DPSDLIPPGW 60 SEQERYFFTC KEAKYVKGRR ANRATGAGYW KATGKEKPVA VPVAAAAPTR TAVVVGMKRS 120 LVFYRGKPPT GRKTDWVMHE YRLAGAGLAP CRRAADHPAR PAEGWVLCRV FRKKGSAAAS 180 TASPTADADD DDATTERADA AAAGVRFIDF FARADARRRR AASPVSSSCV TDARRRAGTA 240 APPPATPPTK LGKARQALQV RSKKEAGLSF VLPHAPAMLV PNSVSSIANS H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-38 | 5 | 177 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-38 | 5 | 177 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-38 | 5 | 177 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-38 | 5 | 177 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-38 | 5 | 177 | 13 | 169 | NAC domain-containing protein 19 |
4dul_B | 3e-38 | 5 | 177 | 13 | 169 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243244 | 0.0 | AK243244.1 Oryza sativa Japonica Group cDNA, clone: J100046N20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618303.1 | 1e-125 | NAC domain-containing protein 83 | ||||
Swissprot | O22798 | 4e-52 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
Swissprot | Q9FY93 | 3e-52 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A0E0FC46 | 0.0 | A0A0E0FC46_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI12G08230.1 | 1e-166 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 4e-50 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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