PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI12G07700.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 457aa MW: 52179.7 Da PI: 8.698

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI12G07700.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62	1.7e-19	229	330	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkekdgkwev 78 ++Yn+YAk GF +++s++kks + +e + +f C+ e ++++++ k + k+r+ ++ +t+Cka++++ k+ ++kw+v OMERI12G07700.1 229 DYYNRYAKYWGFGTKISSNKKS-NVTEYNRCEFACYSERTSQKKNPKssassgsknceslgkpKGKARKCNSLRKTDCKARMVIVKR-KDKWVV 320 69****************99.66669*****999888877789*********9999***************99.9* PP FAR1 79 tkleleHnHe 88 t ++leHnH+ OMERI12G07700.1 321 TIVDLEHNHP 330 *******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-17	229	330	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MVSRASARDT SPTARSTAAT TPSSFPRREP GSVSRAYLAG GTERRHNYSE QGSARRRLQQ 60 QRALMRVIPR RRQRVHLFAA IPGENPTQAP TSIAGFRPAS RTQDMVLTLL LTCRMNSSVG 120 SAGRIVEEVP NEGSDKDDVC VEREMEQVSS HDDDVLREAS HDDMLREALL KTGLFTGAMS 180 IDQIDAGDGF EIQDVFGRED GETKDEGVQY QPTIPTVGME FFSEKEAQDY YNRYAKYWGF 240 GTKISSNKKS NVTEYNRCEF ACYSERTSQK KNPKSSASSG SKNCESLGKP KGKARKCNSL 300 RKTDCKARMV IVKRKDKWVV TIVDLEHNHP PLSPSSLRFL RSHRNVSDED YELIELLHNN 360 NIPTRRIMSL LSDLYGNIRN IPYELQGNKY MQHLYENRKR WATCFFMDCF FPFMCSSQRS 420 ESMNNLFKDF VHPVDSIRNF IVQYEKLAQS CLDRDDQ

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MVSRASARDT SPTARSTAAT TPSSFPRREP GSVSRAYLAG GTERRHNYSE QGSARRRLQQ  60
QRALMRVIPR RRQRVHLFAA IPGENPTQAP TSIAGFRPAS RTQDMVLTLL LTCRMNSSVG  120
SAGRIVEEVP NEGSDKDDVC VEREMEQVSS HDDDVLREAS HDDMLREALL KTGLFTGAMS  180
IDQIDAGDGF EIQDVFGRED GETKDEGVQY QPTIPTVGME FFSEKEAQDY YNRYAKYWGF  240
GTKISSNKKS NVTEYNRCEF ACYSERTSQK KNPKSSASSG SKNCESLGKP KGKARKCNSL  300
RKTDCKARMV IVKRKDKWVV TIVDLEHNHP PLSPSSLRFL RSHRNVSDED YELIELLHNN  360
NIPTRRIMSL LSDLYGNIRN IPYELQGNKY MQHLYENRKR WATCFFMDCF FPFMCSSQRS  420
ESMNNLFKDF VHPVDSIRNF IVQYEKLAQS CLDRDDQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005100	0.0	AP005100.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0018O23.
GenBank	AP005766	0.0	AP005766.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0028O21.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639432.1	6e-48	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0E0FBX2	0.0	A0A0E0FBX2_9ORYZ; Uncharacterized protein
STRING	OMERI12G07520.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16638	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-09	far-red elongated hypocotyls 3