PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G06090.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 488aa    MW: 52722.1 Da    PI: 6.5573
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G06090.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.1e-09109134126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C ++ ++G C++G +CkF+H+
  OMERI12G06090.5 109 PGEPDCTYYVKFGSCRFGMKCKFNHP 134
                      5789*********************8 PP
2zf-CCCH171e-05203221725
                      SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   7 rffartGtCkyGdrCkFaH 25 
                      ++++  G Ck+G  Ck+ H
  OMERI12G06090.5 203 KYYSTPGGCKFGKACKYLH 221
                      79***************** PP
3zf-CCCH34.73e-11246270226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++rtG Cky  +CkF+H+
  OMERI12G06090.5 246 GEKECPYYMRTGSCKYATNCKFHHP 270
                      7899********************9 PP
4zf-CCCH201.2e-06393419127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++f ++G+Ck+  +Ck++H++
  OMERI12G06090.5 393 PGQPECQHFVKSGFCKFRMKCKYHHPR 419
                      5789*********************96 PP
5zf-CCCH23.97.5e-08438463227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C ++ r+G Ck+G+ C ++H++
  OMERI12G06090.5 438 DQPVCTYYGRYGVCKFGPACAYNHPF 463
                      6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258108136IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6110134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-5113136IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.282196224IPR000571Zinc finger, CCCH-type
SMARTSM003561.2200223IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5244271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793244272IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-8246270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6247271IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4250269IPR000571Zinc finger, CCCH-type
SMARTSM003560.028392419IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676392420IPR000571Zinc finger, CCCH-type
SMARTSM003560.0081436463IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732436464IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-5437464IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5438463IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MADADARAPP KSDPGATPIG SISPSSAAPA AAVEDEVEVE VEVEEQLAGL AIADQGEELL  60
LPKPTGWEDG PVVAGDEVSG GEKLPGEVAA AVGVEGAAAD SRPRFPRRPG EPDCTYYVKF  120
GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGGSNSSSNK ASSPDDEQAP KEEYGSYVPD  180
ISPEVDSLII DVKKGRMEPK ELKYYSTPGG CKFGKACKYL HRDGKEGKTD AEKVDLNFLG  240
LPLRPGEKEC PYYMRTGSCK YATNCKFHHP DPSNVASKDP QLEHENGDTP QQDVQGSSSQ  300
PNASIWPDQR TVNEHHVPFI APSPSYSAGM LPPQGMYPPP EWNGYHQVPL NPYYPPGVPF  360
QHFPAAPINH PMYKAPEIPG HQQVPSEEYP ERPGQPECQH FVKSGFCKFR MKCKYHHPRS  420
PVPPAGALSP LGLPIKPDQP VCTYYGRYGV CKFGPACAYN HPFNFSPVPA AGPPLLPAQY  480
PTPGNYTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114980.0AK111498.1 Oryza sativa Japonica Group cDNA clone:J013000H23, full insert sequence.
GenBankAK1217740.0AK121774.1 Oryza sativa Japonica Group cDNA clone:J033092M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620308.10.0zinc finger CCCH domain-containing protein 65 isoform X8
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A0E0FBA40.0A0A0E0FBA4_9ORYZ; Uncharacterized protein
STRINGOPUNC12G07750.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-67C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]