PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G06090.4
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 391aa    MW: 43320.9 Da    PI: 8.8952
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G06090.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.6e-091237126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++++ C ++ ++G C++G +CkF+H+
  OMERI12G06090.4 12 PGEPDCTYYVKFGSCRFGMKCKFNHP 37
                     5789*********************8 PP
2zf-CCCH26.41.2e-08102124325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      +e+C++++  G Ck+G  Ck+ H
  OMERI12G06090.4 102 QEECKYYSTPGGCKFGKACKYLH 124
                      699******************** PP
3zf-CCCH35.12.3e-11149173226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++rtG Cky  +CkF+H+
  OMERI12G06090.4 149 GEKECPYYMRTGSCKYATNCKFHHP 173
                      7899********************9 PP
4zf-CCCH20.49.3e-07296322127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++f ++G+Ck+  +Ck++H++
  OMERI12G06090.4 296 PGQPECQHFVKSGFCKFRMKCKYHHPR 322
                      5789*********************96 PP
5zf-CCCH24.25.7e-08341366227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C ++ r+G Ck+G+ C ++H++
  OMERI12G06090.4 341 DQPVCTYYGRYGVCKFGPACAYNHPF 366
                      6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00131138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2581139IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-61337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-51639IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.10399127IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4100126IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-6102124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-5103127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4105125IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5147174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793147175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6149174IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-8149173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4153172IPR000571Zinc finger, CCCH-type
SMARTSM003560.028295322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676295323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-5299323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732339367IPR000571Zinc finger, CCCH-type
SMARTSM003560.0081339366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5340367IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5341366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MRATTSRAEQ RPGEPDCTYY VKFGSCRFGM KCKFNHPARK KKSRVKGSNG GSGSGGSNSS  60
SNKASSPDDE QIIDVKKGRM EPKELKVAKE KRKEFISEGS SQEECKYYST PGGCKFGKAC  120
KYLHRDGKEG KTDAEKVDLN FLGLPLRPGE KECPYYMRTG SCKYATNCKF HHPDPSNVAS  180
KDPQLEHENG DTPQQDVQGS SSQPNASIWP DQRTVNEHHV PFIAPSPSYS AGMLPPQGMY  240
PPPEWNGYHQ VPLNPYYPPG VPFQHFPAAP INHPMYKAPE IPGHQQVPSE EYPERPGQPE  300
CQHFVKSGFC KFRMKCKYHH PRSPVPPAGA LSPLGLPIKP DQPVCTYYGR YGVCKFGPAC  360
AYNHPFNFSP VPAAGPPLLP AQYPTPGNYT L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114980.0AK111498.1 Oryza sativa Japonica Group cDNA clone:J013000H23, full insert sequence.
GenBankAK1217740.0AK121774.1 Oryza sativa Japonica Group cDNA clone:J033092M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620302.10.0zinc finger CCCH domain-containing protein 65 isoform X3
RefseqXP_015620303.10.0zinc finger CCCH domain-containing protein 65 isoform X4
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A0E0FBA30.0A0A0E0FBA3_9ORYZ; Uncharacterized protein
STRINGOMERI12G06060.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.17e-67C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]