PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI12G03740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 372aa MW: 40853.3 Da PI: 9.8224 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 23 | 1.7e-07 | 240 | 273 | 17 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 A+rsR RK+++i+eLe++v++L++e + e++ OMERI12G03740.1 240 AQRSRVRKLQYIAELERRVQALQTEGVEVSAEMD 273 89*********************99776666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.3E-6 | 229 | 288 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.02E-15 | 230 | 280 | No hit | No description |
SuperFamily | SSF57959 | 5.4E-6 | 239 | 282 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-6 | 240 | 294 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MMANARFQKQ ALLPPRSPFP AAVGAAPSPS PHAELGPIAR PRDAPHRHGH QRTSSESVLI 60 DEQPSWLDDL LDEPEAAARP HGRPGHRRSS SDSFTLFDGG ASAAAAGMYD NVFDGMRGRG 120 GGGQQVGSWG GVPEFFPEQS SFGRPQGQGG RPWDSRLMLR QGGGGGGGMP VPMREMNGGH 180 HGPPNAFGDH GHGSLPNGVD RKGPGDSAHD QRMGAERKEG AHLRHSQSEA DTKRAKQQYA 240 QRSRVRKLQY IAELERRVQA LQTEGVEVSA EMDFLGQQNI MLDLENKALK QRLESLSQEH 300 LIKRFQQEMF EREIGRLRSL FQQQQQQQHI PQQQGPTHSR SNSRDLDSQF ANMSLKHGDP 360 NSGRDAVPGL RI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287555 | 0.0 | AK287555.1 Oryza sativa Japonica Group cDNA, clone: J065019F14, full insert sequence. | |||
GenBank | AK287716 | 0.0 | AK287716.1 Oryza sativa Japonica Group cDNA, clone: J065134G21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618309.1 | 0.0 | uncharacterized protein At4g06598 | ||||
Refseq | XP_025877630.1 | 0.0 | uncharacterized protein At4g06598 | ||||
TrEMBL | A0A0E0FAF2 | 0.0 | A0A0E0FAF2_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI12G03770.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3310 | 36 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58110.2 | 2e-61 | bZIP family protein |