PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G02590.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 356aa    MW: 37029.6 Da    PI: 5.5676
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G02590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP137.21.4e-42421873125
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgk 89 
                       +k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++       + ++s ssasn++ ++
  OMERI12G02590.1  42 LAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSslnisirSGAASASSASNPNRAS 135
                      689*****************************************************************88766666665566666666666666 PP

              TCP  90 aaksaa.kskksqksaasalnlakesr...............akarararer 125
                        ++ a +++++q++ +++l ++++                 a a +r+r+r
  OMERI12G02590.1 136 PFPALAlHPHHQQHDVSAMLGYHHHLLpppqqqqespqdpggAGAFMRKRYR 187
                      6666667888888888888888885545666666666666555555555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.70547101IPR017887Transcription factor TCP subgroup
PfamPF036343.0E-3847158IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGALAITPVV AEQPQASSGG GEKKVVAPTT PAAAGAAATT TLAKRPSKDR HTKVDGRGRR  60
IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA ATGTGTIPAN FSSLNISIRS  120
GAASASSASN PNRASPFPAL ALHPHHQQHD VSAMLGYHHH LLPPPQQQQE SPQDPGGAGA  180
FMRKRYREDL FKEDDDRQDP SAPKAREQQP TTPQAAAAAA AAAMWAVAPN TAAPGGAFWM  240
LPVSTSSAAA ARPTEQPMWS FAGGGGGAAT VQAPLQFMST RVNYPGSAGA GMSDTNLGML  300
AALNAYNRGG AGDQQQQQQP EMDQQGRNDD DDDDDGDDSG DEDNGGGNNN NNNSSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139330.0AL713933.6 Oryza sativa chromosome 12, . BAC OJ1041_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618822.11e-176transcription factor PCF3-like
SwissprotQ53PH24e-76PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A0E0F9Z90.0A0A0E0F9Z9_9ORYZ; Uncharacterized protein
STRINGOMERI12G02600.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-46TCP family protein