PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G01740.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 395aa    MW: 44180.9 Da    PI: 7.3492
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G01740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.53.5e-3085189198
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.. 87 
                      f+k ltpsdv+k++rlv+pk++ae++     g + e++  l++edesg+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++   
  OMERI12G01740.1  85 FEKPLTPSDVGKLNRLVIPKQHAERYfplggGDSGEKGLLLSFEDESGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGlg 178
                      99****************************9555568889************************************************886553 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                       + +l+++ +r
  OMERI12G01740.1 179 AGDRLFIGCRR 189
                      44445555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4080194IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-3082177IPR015300DNA-binding pseudobarrel domain
CDDcd100174.09E-2884176No hitNo description
PROSITE profilePS5086313.64885190IPR003340B3 DNA binding domain
PfamPF023623.9E-2785189IPR003340B3 DNA binding domain
SMARTSM010191.5E-2285190IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MHGSLHNTPS SSSSPTSSPL LSSPPLPNFC SQHIFVSIDR SISSSSAAAM AMHPLAQGHP  60
QAWPWGVAMY TNLHYHHHYE REHLFEKPLT PSDVGKLNRL VIPKQHAERY FPLGGGDSGE  120
KGLLLSFEDE SGKPWRFRYS YWTSSQSYVL TKGWSRYVKE KRLDAGDVVH FERVRGLGAG  180
DRLFIGCRRR GESAPAPPAP PAVRVTPPPA LNGGEQQPWS PMCYSTSGSS YDPTSPANSY  240
AYHRSVDQDH SDILHAGESQ RDTDAKSSSA ASAPPPSRRL RLFGVNLDCG PEPEADQATA  300
MYGYMHHQSP YAAVSAVPNY WSGQLVDEMR RSEAFACRIL TTNSETSYYY HHYYYYTLNQ  360
VTETYLQYGG PCSRWGGFRK HQVEKEREER DGDTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-49801903113B3 domain-containing transcription factor NGA1
5os9_B5e-49801903113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9287580.0AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618154.11e-176B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI01e-136Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A0E0F9L50.0A0A0E0F9L5_9ORYZ; Uncharacterized protein
STRINGOMERI12G01720.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.21e-51B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]