PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G01160.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 356aa    MW: 38677.4 Da    PI: 4.3199
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G01160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.81.9e-18161422126
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgk.....rknr.atksgyWka 85 
                      p G+ F P+ e+l+ +yL++ ++g+++e+  ++++e+d+y ++P +L +   ++ ++ k+wyf + ++ k  +g      r nr +   g+W++
  OMERI12G01160.1  16 PSGYFFVPKPEQLIRDYLNHWITGRPIEElRDIVREADVYGSDPATLTEahrAYGHDGKSWYFLTVAKWKGGRGGagtagRLNRcVEGGGTWHN 109
                      89************************87725569999**********8434344457789****999999884434445599**666699**** PP

              NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                      + + +++        g ++ + +   rap  +ktdW+m+e 
  OMERI12G01160.1 110 SQRRRAIEG-----YGDRQAFEY---RAPGNKKTDWLMEEI 142
                      ***999987.....899999998...599999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-2113164IPR003441NAC domain
PROSITE profilePS5100521.97315164IPR003441NAC domain
PfamPF023651.9E-1016141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAEDDKKQKG PDVTVPSGYF FVPKPEQLIR DYLNHWITGR PIEELRDIVR EADVYGSDPA  60
TLTEAHRAYG HDGKSWYFLT VAKWKGGRGG AGTAGRLNRC VEGGGTWHNS QRRRAIEGYG  120
DRQAFEYRAP GNKKTDWLME EIASNLPAAI TDEGIMVICK VYLSPRAKEA TADEEERQET  180
NVVPGPKRLR EAEATGYDDP APPQPDVGCS YSGGGETSQA TASMDYCCST TTHTADDTAN  240
AAYYHGDADA IKPEAYDGGD YGIGINPDGE LVLCGIGTQG QMPLAMQNTN GEMTLFSPMN  300
GYGVGFNEEV RQEPQVGGEV EMNDFFNDLF VDFDGAGDPN PNPNGVGDGH GHILCE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664975.11e-74PREDICTED: NAC domain-containing protein 76-like, partial
TrEMBLA0A0E0F9C40.0A0A0E0F9C4_9ORYZ; Uncharacterized protein
STRINGOMERI12G01110.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.14e-10NAC domain containing protein 64