PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G01070.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 706aa    MW: 77890.9 Da    PI: 6.1501
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G01070.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.12.5e-10574619550
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                      k+ r+   NReA r++Rq+Kka +++Lee+vk L a N++L k+l+
  OMERI12G01070.2 574 KKGRKPLGNREAVRKYRQKKKAHTAHLEEEVKRLRAINQQLVKRLQ 619
                      78899999**********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF549281.29E-35108273IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.6E-22110187IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010217.012111187IPR000504RNA recognition motif domain
SMARTSM003601.1E-21112183IPR000504RNA recognition motif domain
PfamPF000762.2E-16113180IPR000504RNA recognition motif domain
CDDcd005902.99E-20113183No hitNo description
Gene3DG3DSA:3.30.70.3302.0E-15188268IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010211.486189270IPR000504RNA recognition motif domain
SMARTSM003607.4E-12190266IPR000504RNA recognition motif domain
PfamPF000761.3E-10191255IPR000504RNA recognition motif domain
CDDcd005908.85E-12191257No hitNo description
Gene3DG3DSA:3.30.70.3301.5E-22269360IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.06E-21276362IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010215.528282359IPR000504RNA recognition motif domain
SMARTSM003605.4E-18283355IPR000504RNA recognition motif domain
PfamPF000765.3E-16284352IPR000504RNA recognition motif domain
Gene3DG3DSA:1.20.5.1702.9E-12569637No hitNo description
SMARTSM003381.6E-8570637IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.841572619IPR004827Basic-leucine zipper domain
PfamPF077166.8E-11574623IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.95E-7574619No hitNo description
CDDcd146861.11E-10577619No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MPRRTDNAAS ANSVEPEKSE ECLEFDDDEE EVEEEEIEYE EIEEEIEEEE EVEEDEDVVE  60
EVEEVDEEED EEEEEESDEN EGVSKTKGVH QKDVTEKGKH AELLALPPHG SEVYVGGISS  120
DVSSEDLKRL CEPVGEVVEV RMMRGKDDSR GYAFVNFRTK GLALKAVKEL NNAKLKGKWI  180
RVSSSQAKNK LFIGNVPHSW TDDDFRKAVE EVGPGVLKAD LMKVSSANRN RGYGFVEYYN  240
HACAEYARQE MSSPTFKLDS NAPTVSWADP KNNDSASTSQ VKSVYVKNLP KNVTQAQLKR  300
LFEHHGEIEK VVLPPSRGGH DNRYGFVHFK DRSMAMRALQ NTERYELDGQ VLDCSLAKPP  360
AADKKDDRVP LPSSNGAPLL PSYPPLGYGI MSVPGAYGAV PASTTQPMLY APRAPPGAAM  420
VPMMLPDGRL VYVVQQPGGQ LPLASPPPQQ AGHRSGSGGR HGGSGGRYGR GGGSSGSSRP  480
GAKRQRGDDN SSSRHKGRRR PEIVLSSQMM FPNPEIPTSL DDFLPSIRTT CTHTHTCNPP  540
GPSAAPHTHT CYHTHTRVFS SDDDSCGGDK AKPKKGRKPL GNREAVRKYR QKKKAHTAHL  600
EEEVKRLRAI NQQLVKRLQG QAAFEAEVAR LRTSLVDVRS RINGALGSYP LQAQCGVDNV  660
LGCDGMAQCF AGKPELGHKS ASQLEMPDEQ HKPVLKLFKY NKNKFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6r5k_D6e-159144922479Polyadenylate-binding protein, cytoplasmic and nuclear
6r5k_F6e-159144922479Polyadenylate-binding protein, cytoplasmic and nuclear
6r5k_H6e-159144922479Polyadenylate-binding protein, cytoplasmic and nuclear
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1464472GGRYGRGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA on GAGA-like motif and 5'-(C/G)ACGTG(G/T)C(A/G)-3' consensus motif in the promoters of target genes (PubMed:27495811). Component of ribonucleosomes, which are complexes of at least 20 other different heterogenious nuclear ribonucleoproteins (hnRNP). hnRNP play an important role in processing of precursor mRNA in the nucleus (By similarity). Required during flower development and for cell fate determination (PubMed:21304947). Acts both as an antagonist and as a promoter of polycomb LHP1 gene regulation activity, depending of target genes, to regulate the transcription of stress-responsive and flowering genes (PubMed:21304947, PubMed:27495811). May regulate histone H3 trimethylation on lysine 27 (H3K27me3) (PubMed:21304947). Recognizes and binds histone H3 tails methylated at 'Lys-4' (H3K4me) and acetylated at 'Lys-9' (H3K9ac), leading to epigenetic activation. When in complex with LHP1, recognizes and binds histone H3 tails methylated at 'Lys-4' (H3K4me) and 'Lys-27' (H3K27me), mostly corresponding to stress-responsive genes (PubMed:27495811). May function as a suppressor of cell-autonomous immune responses involving glucosinolates, salicylic acid (SA) and jasmonic acid (JA) pathways toward pathogenic bacteria and fungi (PubMed:24914891). {ECO:0000250|UniProtKB:O60506, ECO:0000269|PubMed:21304947, ECO:0000269|PubMed:24914891, ECO:0000269|PubMed:27495811}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slighty induced upon pathogen infection (e.g. P.syringae) (PubMed:24914891). Rapidly recruited to chromatin upon methyl jasmonate treatment (MeJA) to mediate transcriptional gene activation (PubMed:27495811). {ECO:0000269|PubMed:24914891, ECO:0000269|PubMed:27495811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687000.0AK068700.1 Oryza sativa Japonica Group cDNA clone:J013160I09, full insert sequence.
GenBankAK0694930.0AK069493.1 Oryza sativa Japonica Group cDNA clone:J023024M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619732.10.0heterogeneous nuclear ribonucleoprotein Q isoform X2
RefseqXP_015619733.10.0heterogeneous nuclear ribonucleoprotein Q isoform X2
RefseqXP_015619734.10.0heterogeneous nuclear ribonucleoprotein Q isoform X2
RefseqXP_025877774.10.0heterogeneous nuclear ribonucleoprotein Q isoform X2
SwissprotQ9ASP61e-125HNRPQ_ARATH; Heterogeneous nuclear ribonucleoprotein Q
TrEMBLA0A0E0F9B40.0A0A0E0F9B4_9ORYZ; Uncharacterized protein
STRINGORGLA11G0021700.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35040.19e-40bZIP family protein
Publications ? help Back to Top
  1. Peal L,Jambunathan N,Mahalingam R
    Phylogenetic and expression analysis of RNA-binding proteins with triple RNA recognition motifs in plants.
    Mol. Cells, 2011. 31(1): p. 55-64
    [PMID:21120628]
  2. Le Roux C, et al.
    The hnRNP-Q protein LIF2 participates in the plant immune response.
    PLoS ONE, 2014. 9(6): p. e99343
    [PMID:24914891]
  3. Molitor AM, et al.
    The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 Subunit LHP1 Function in Concert to Regulate the Transcription of Stress-Responsive Genes.
    Plant Cell, 2016. 28(9): p. 2197-2211
    [PMID:27495811]