PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI12G00770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 215aa MW: 24385.2 Da PI: 6.2531 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.6 | 5.2e-19 | 17 | 143 | 2 | 126 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgk.....rknr.atksgyWka 85 p G+ F P+ e+l+ +yL++ ++g+++e+ ++++e+d+y ++P +L + +++++ k+wyf + ++ k +g r nr + g+W++ OMERI12G00770.1 17 PSGYFFVPKPEQLIRDYLNHWITGRPIEElRDIVREADVYGSDPATLTEahrAYAHDGKSWYFLTVAKWKGGRGGvgtagRLNRcVEGGGTWHN 110 89************************87725569999**********8434444457789*****999998854444455****666699**** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126 + + +++ g ++ + + rap +ktdW+m+e OMERI12G00770.1 111 SQRRRAIEG-----YGDRQAFEY---RAPGNKKTDWLMEEI 143 ***999987.....899999998...599999*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-22 | 14 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.973 | 16 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-11 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MAEDDDKKQK GPDVTVPSGY FFVPKPEQLI RDYLNHWITG RPIEELRDIV READVYGSDP 60 ATLTEAHRAY AHDGKSWYFL TVAKWKGGRG GVGTAGRLNR CVEGGGTWHN SQRRRAIEGY 120 GDRQAFEYRA PGNKKTDWLM EEIASNLPAA ITDEGIMVIC KVYLSPRAKE ATPDEEERQE 180 TNVDLKGANI YQFQMAYMAS KDYFSVNPNH NNLLH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664975.1 | 1e-71 | PREDICTED: NAC domain-containing protein 76-like, partial | ||||
TrEMBL | A0A0E0F976 | 1e-161 | A0A0E0F976_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI12G00750.1 | 1e-134 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11474 | 18 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 7e-11 | vascular related NAC-domain protein 1 |