PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI12G00500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 34284.4 Da PI: 9.2441 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.7 | 4.2e-48 | 14 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtd e++ +yL +k + +++ i+evd++k+ePwdLp +++ +++ewy Fs++d ky+tg r+nratk+gyWkatgkd+e+++ OMERI12G00500.1 14 LPPGFRFHPTDAEVILNYLLEKFINPSFTS-LPIREVDLNKCEPWDLP-TARMGKNEWY-FSRKDMKYPTGMRTNRATKEGYWKATGKDREIFE 104 79**********************999888.56***************.4455677885.7999****************************** PP NAM 95 k..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grapkg++t+Wvmhe+rl OMERI12G00500.1 105 PaickgissknNKQLVGMKKTLVFYNGRAPKGTRTNWVMHEFRL 148 999999999888888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-53 | 10 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.078 | 14 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-23 | 15 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MVEPLKSEVG SLFLPPGFRF HPTDAEVILN YLLEKFINPS FTSLPIREVD LNKCEPWDLP 60 TARMGKNEWY FSRKDMKYPT GMRTNRATKE GYWKATGKDR EIFEPAICKG ISSKNNKQLV 120 GMKKTLVFYN GRAPKGTRTN WVMHEFRLHA NLHNHYPNLR LNPNEWVVCK VFHKKQGDEA 180 INNQQQQPQP AVDQYDSTGT PNSISSVVQA DDDIFADPSI YDFSNSSANI LSAPPNNNAV 240 VYSSVCASTT TSFQQQPNCY SAPLQQHVSS WNNTPGAGGA HGIGSSYYNL QQRSSSSRRR 300 QLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-42 | 12 | 175 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-42 | 12 | 175 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-42 | 12 | 175 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-42 | 12 | 175 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-42 | 12 | 175 | 18 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-42 | 12 | 175 | 18 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-42 | 12 | 175 | 18 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-42 | 12 | 175 | 18 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-42 | 12 | 175 | 18 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-42 | 12 | 175 | 18 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-42 | 12 | 175 | 18 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-42 | 12 | 175 | 18 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-42 | 12 | 175 | 15 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-42 | 12 | 175 | 15 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123519 | 1e-177 | AC123519.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence. | |||
GenBank | AC123525 | 1e-177 | AC123525.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence. | |||
GenBank | AK288271 | 1e-177 | AK288271.1 Oryza sativa Japonica Group cDNA, clone: J090017A22, full insert sequence. | |||
GenBank | AP014967 | 1e-177 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616089.1 | 1e-176 | NAC domain-containing protein 77-like | ||||
Swissprot | Q5CD17 | 1e-152 | NAC77_ORYSJ; NAC domain-containing protein 77 | ||||
TrEMBL | A0A0E0F934 | 0.0 | A0A0E0F934_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI12G00520.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5120 | 30 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 7e-66 | NAC family protein |