PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G00500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 303aa    MW: 34284.4 Da    PI: 9.2441
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G00500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.74.2e-48141481128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtd e++ +yL +k  + +++    i+evd++k+ePwdLp +++ +++ewy Fs++d ky+tg r+nratk+gyWkatgkd+e+++
  OMERI12G00500.1  14 LPPGFRFHPTDAEVILNYLLEKFINPSFTS-LPIREVDLNKCEPWDLP-TARMGKNEWY-FSRKDMKYPTGMRTNRATKEGYWKATGKDREIFE 104
                      79**********************999888.56***************.4455677885.7999****************************** PP

              NAM  95 k..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 +++lvg+kktLvfy+grapkg++t+Wvmhe+rl
  OMERI12G00500.1 105 PaickgissknNKQLVGMKKTLVFYNGRAPKGTRTNWVMHEFRL 148
                      999999999888888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-5310174IPR003441NAC domain
PROSITE profilePS5100550.07814174IPR003441NAC domain
PfamPF023654.8E-2315148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MVEPLKSEVG SLFLPPGFRF HPTDAEVILN YLLEKFINPS FTSLPIREVD LNKCEPWDLP  60
TARMGKNEWY FSRKDMKYPT GMRTNRATKE GYWKATGKDR EIFEPAICKG ISSKNNKQLV  120
GMKKTLVFYN GRAPKGTRTN WVMHEFRLHA NLHNHYPNLR LNPNEWVVCK VFHKKQGDEA  180
INNQQQQPQP AVDQYDSTGT PNSISSVVQA DDDIFADPSI YDFSNSSANI LSAPPNNNAV  240
VYSSVCASTT TSFQQQPNCY SAPLQQHVSS WNNTPGAGGA HGIGSSYYNL QQRSSSSRRR  300
QLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-421217515166NO APICAL MERISTEM PROTEIN
1ut4_B3e-421217515166NO APICAL MERISTEM PROTEIN
1ut7_A3e-421217515166NO APICAL MERISTEM PROTEIN
1ut7_B3e-421217515166NO APICAL MERISTEM PROTEIN
3swm_A4e-421217518169NAC domain-containing protein 19
3swm_B4e-421217518169NAC domain-containing protein 19
3swm_C4e-421217518169NAC domain-containing protein 19
3swm_D4e-421217518169NAC domain-containing protein 19
3swp_A4e-421217518169NAC domain-containing protein 19
3swp_B4e-421217518169NAC domain-containing protein 19
3swp_C4e-421217518169NAC domain-containing protein 19
3swp_D4e-421217518169NAC domain-containing protein 19
4dul_A3e-421217515166NAC domain-containing protein 19
4dul_B3e-421217515166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235191e-177AC123519.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence.
GenBankAC1235251e-177AC123525.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence.
GenBankAK2882711e-177AK288271.1 Oryza sativa Japonica Group cDNA, clone: J090017A22, full insert sequence.
GenBankAP0149671e-177AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616089.11e-176NAC domain-containing protein 77-like
SwissprotQ5CD171e-152NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A0E0F9340.0A0A0E0F934_9ORYZ; Uncharacterized protein
STRINGOMERI12G00520.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.17e-66NAC family protein