PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G19020.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 409aa    MW: 43006.3 Da    PI: 10.7694
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G19020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.88.4e-15150182133
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                      C nC + +Tp+WR+gp g +tLCnaCG++ r  
  OMERI11G19020.1 150 CLNCDAVETPQWRSGPMGRSTLCNACGVRLRAV 182
                      99**************************99865 PP
2GATA56.83e-18274308135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg+t+Tp+WR+gp g  tLCnaCG++yr  +l
  OMERI11G19020.1 274 CVHCGSTETPQWREGPTGRGTLCNACGVRYRQGRL 308
                      *******************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012176.5E-127789No hitNo description
PRINTSPR012176.5E-1296112No hitNo description
SuperFamilySSF577161.33E-12143184No hitNo description
SMARTSM004016.5E-14144198IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.097144183IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-13148183IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.29E-9149183No hitNo description
PfamPF003203.7E-12150181IPR000679Zinc finger, GATA-type
PROSITE patternPS003440150175IPR000679Zinc finger, GATA-type
PRINTSPR012176.5E-12199215No hitNo description
PRINTSPR012176.5E-12218235No hitNo description
PRINTSPR012176.5E-12243268No hitNo description
SMARTSM004013.1E-16268318IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.716268304IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-14270330No hitNo description
Gene3DG3DSA:3.30.50.109.0E-15272306IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.19E-15273330No hitNo description
PfamPF003204.5E-16274308IPR000679Zinc finger, GATA-type
PROSITE patternPS003440274299IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MAAVEGGIGE PPGLARERRP RLRRSVAATG DMDGDGDVGG GGGGGGGGVR YVLALPAMAS  60
LAVLIAHLDA AVPVPRRPRS YLPRAVPMAW WAFRLPVFRP PPPPPPPPAK NPVKEEEGVA  120
RVVVVVAPPP PVDPGEEEAG KRAAKRARRC LNCDAVETPQ WRSGPMGRST LCNACGVRLR  180
AVGSLPEHRP AAARTPTAPA SPPDSPIWTP GHKPPSSSPD IYLVRRTPKL PVTRPPRSKQ  240
APPTAPAPPP PPQPASPKTK TKAKAKKPKR KRSCVHCGST ETPQWREGPT GRGTLCNACG  300
VRYRQGRLLP EYRPKGSPTF SPSVHAANHR QVLELRRQQR QSTNPSPPPP PPVSAAEPVP  360
DEQKEEVVSV PVAAAAPATD GGAASSLDAL LLDGPSAPLI VDGDDFLVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683060.0AK068306.1 Oryza sativa Japonica Group cDNA clone:J013136H07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620068.11e-180vegetative cell wall protein gp1
TrEMBLA0A0E0F8Q00.0A0A0E0F8Q0_9ORYZ; Uncharacterized protein
STRINGOMERI11G18900.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.19e-24GATA transcription factor 14