PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI11G18020.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 569aa MW: 63072.4 Da PI: 7.7162 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.9 | 3.1e-19 | 180 | 223 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ r+vt+skRr gilKKA+ELS+LCd+ +++fs+++k OMERI11G18020.2 180 KLENSGGRHVTYSKRRSGILKKAKELSILCDIPLILLMFSPNDK 223 679999**********************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.876 | 171 | 223 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.9E-26 | 171 | 230 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.22E-23 | 172 | 265 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-14 | 173 | 193 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-16 | 182 | 224 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-14 | 193 | 208 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-14 | 208 | 229 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MCLNLSRSLP RVSLLFSLSF LDLLSLSSSS SSFSFSLSRP IHPRTADFAG SIPTPTPLPR 60 GRSIDRSFDR SEQANSLIPL SLSSVLGSTQ LPDDFILNHR RRRRHRQEEE KKLHLGLSIG 120 CSDFFWIYSC SLCAPGIRSL GRAVISASRV STNWTADSSP SLRRGDSASA MGRVKLKIKK 180 LENSGGRHVT YSKRRSGILK KAKELSILCD IPLILLMFSP NDKPTICVGD HSSIEDVITK 240 YAQQTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGSG GQTVEVHISI QKDDIAAYAF 300 LVSCFLCLCV QMLIKSIVWQ ELSSHLGALQ CQMADVEKRL SYWSDPEKVE NIDHIRAMEQ 360 SLKESLNRIR IHKENFAKQH LMSLQCAAAQ FQNDMQLPLG LTGDPNTSSW FHGGGGAEAQ 420 QPMMLPEDPS LLHQRDIGCS ASTSLQSYPG YFSMGKQSTD NAGGGEQHHH AAVQQQQQQP 480 EFSQADCLTS LQLGAQFPYP SAFDNAGLLS DRLFDNAAAA MDFGSHYDLP RPGDEASFQN 540 WASAACGATM YDHHQQQQQQ QQPAQPSMT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FM956505 | 0.0 | FM956505.1 Oryza sativa Japonica Group mRNA for MADS68 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618004.1 | 0.0 | agamous-like MADS-box protein AGL65 isoform X3 | ||||
TrEMBL | A0A0E0F8A8 | 0.0 | A0A0E0F8A8_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI11G17850.2 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4626 | 36 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 4e-74 | AGAMOUS-like 65 |