PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G15200.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 365aa    MW: 38451.8 Da    PI: 4.5033
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G15200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-194291255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  OMERI11G15200.1 42 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 91
                     789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.40E-294198No hitNo description
Gene3DG3DSA:3.30.730.102.5E-274298IPR001471AP2/ERF domain
PROSITE profilePS5103219.5594299IPR001471AP2/ERF domain
SMARTSM003804.6E-3542105IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-194299IPR016177DNA-binding domain
PfamPF008478.6E-144291IPR001471AP2/ERF domain
PRINTSPR003674.9E-84354IPR001471AP2/ERF domain
PRINTSPR003674.9E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MATARVASPP STDRKRKASD DDIDAAAAAL TSPPAAPRGR KRFVGVRQRP SGRWVAEIKD  60
TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GANTRTNFWP RPSPPPPPAP PETATPALPS  120
KVTNLLLLRL KARNQQLVDA GAAAAPQEAA LLQLQQQTPA SCQEVFVRGH GEDQYGFHVD  180
DFLSDEHSGD SSLGLDDDDG EEEVEEEEDE LDFQFMDAAP GASAAAGLGG EGALCSPFEM  240
VAAELGGAVD VAAHDAMRQM DYERKISASL YALTGVSECL RIRAAAARDH LTGLREACRK  300
KQKFAAAAAA TAAPPQQQEP SPPPQQPETA SGGGGMSETA SGGGGGDGDV LMWSSLDLAP  360
ICHMA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619512.21e-160ethylene-responsive transcription factor ERN1
TrEMBLA0A0E0F7920.0A0A0E0F792_9ORYZ; Uncharacterized protein
STRINGOMERI11G14970.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-22related to AP2 11