PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI11G12590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 859aa MW: 94264.8 Da PI: 7.0727 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1e-23 | 156 | 257 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F + + OMERI11G12590.1 156 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RGE 246 99*****************************7333.34459************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+v+r+ OMERI11G12590.1 247 NGELRVGVRRA 257 999*****996 PP | |||||||
2 | Auxin_resp | 115.1 | 6.2e-38 | 282 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp Wp+SkWrsLk OMERI11G12590.1 282 AWHAVNTGTMFTVYYKPRTSPAEFVVPYDRYMETLKRNYSIGMRFKMRFEGEEAPEQRFTGTIVGMGDSDPAGWPESKWRSLK 364 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-42 | 149 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.02E-41 | 151 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.37E-22 | 154 | 256 | No hit | No description |
SMART | SM01019 | 9.9E-24 | 156 | 258 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.899 | 156 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-21 | 156 | 257 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-35 | 282 | 364 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.2E-10 | 713 | 815 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.57E-11 | 726 | 807 | No hit | No description |
PROSITE profile | PS51745 | 22.018 | 731 | 815 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 859 aa Download sequence Send to blast |
MATAEVGGGG GGEGDAAAAA VARAGGGGGG GGGGGGGGGG GEDALFTELW SACAGPLVTV 60 PRVGEKVFYF PQGHIEQVEA STNQVGEQRM QLYNLPWKIL CEVMNVELKA EPDTDEVYAQ 120 LTLLPESKQQ EDNGSTEEEV PSAPAAGHVR PRVHSFCKTL TASDTSTHGG FSVLRRHADE 180 CLPPLDMSRQ PPTQELVAKD LHGVEWRFRH IFRGQPRRHL LQSGWSVFVS AKRLVAGDAF 240 IFLRGENGEL RVGVRRAMRQ QTNVPSSVIS SHSMHLGVLA TAWHAVNTGT MFTVYYKPRT 300 SPAEFVVPYD RYMETLKRNY SIGMRFKMRF EGEEAPEQRF TGTIVGMGDS DPAGWPESKW 360 RSLKVRWDEA SSIPRPERVS PWQIEPAVSP PVNPLPVPRT KRLRPNATAL PADSSAIAKE 420 AATKVVVESE PNGTQRTFQT QENATPKSGF GNSSKLESAQ KSIMRPSGFD REKNNTPIQW 480 KLGSDGRMQM RRPESYSEML SGFQPPKDVQ TPQGFCSLPE QITAGHSNFW HTVNAQYQDQ 540 QSNRNMFPSS WSFMPPNTGL GLNKQNYSMI QEVGGLSQRH GNTKFGNGVY AALPGRGTEQ 600 YSGGWFGHMM PNSHMDDTQP CLIKPKPLVV AHGDVQKAKG ASCKLFGIHL DSPAKSEPLK 660 SPSSVVYDGT PQTPGATEWR RPDVTEVEKC SDPSKAMKPL DTPQADSVPE KPSSQQASRN 720 MSCKSQGVST RSCKKVHKQG IALGRSVDLT KFNGYEELIA ELDDMFDFNG ELKGPKKEWM 780 VVYTDNEGDM MLVGDDPWIE FCDMVHKIFI YTRDEVQRMN PGTLNSRSED SHANSMERGS 840 VGREMRGCLS TSSLNSENC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-177 | 28 | 386 | 2 | 354 | Auxin response factor 1 |
4ldw_A | 1e-177 | 28 | 386 | 2 | 354 | Auxin response factor 1 |
4ldw_B | 1e-177 | 28 | 386 | 2 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under light or dark conditions and gravitropic stimulation of coleptile. {ECO:0000269|PubMed:12369618, ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ306306 | 0.0 | AJ306306.1 Oryza sativa subsp. japonica mRNA for auxin response factor 1 (arf1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617186.1 | 0.0 | auxin response factor 23 isoform X1 | ||||
Refseq | XP_015617187.1 | 0.0 | auxin response factor 23 isoform X1 | ||||
Refseq | XP_015617188.1 | 0.0 | auxin response factor 23 isoform X2 | ||||
Swissprot | Q2R3F5 | 0.0 | ARFW_ORYSJ; Auxin response factor 23 | ||||
TrEMBL | A0A0E0F680 | 0.0 | A0A0E0F680_9ORYZ; Auxin response factor | ||||
STRING | OMERI11G12320.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |