PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI11G12080.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 77aa MW: 9102.54 Da PI: 10.8363 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.1 | 3.4e-10 | 6 | 62 | 32 | 88 |
NAM 32 evikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 ++i+++di++++P d+ + ++++++ +fF++++kk++ ++r+n a+ g+W+ + OMERI11G12080.2 6 DFITDIDILHHNPLDIVPTRQEKKNRKHFFTRKEKKHHGDNRRNNAAGIGFWRLAST 62 679*************63445566788***********9*************95544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 11.945 | 1 | 77 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.8E-10 | 2 | 63 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MPLPYDFITD IDILHHNPLD IVPTRQEKKN RKHFFTRKEK KHHGDNRRNN AAGIGFWRLA 60 STEALRVYKN PVIALIK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC136150 | 1e-63 | AC136150.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0023F12, complete sequence. | |||
GenBank | AP014967 | 1e-63 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015697669.1 | 8e-20 | PREDICTED: NAC transcription factor NAM-B1-like | ||||
TrEMBL | A0A0E0F619 | 4e-50 | A0A0E0F619_9ORYZ; Uncharacterized protein | ||||
STRING | ORUFI11G15730.1 | 2e-31 | (Oryza rufipogon) | ||||
STRING | ORGLA11G0125800.1 | 2e-32 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 4e-08 | NAC domain containing protein 83 |