PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G12060.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 277aa    MW: 30337.2 Da    PI: 6.5054
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G12060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.51.1e-31191419128
              NAM   9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kg 97 
                      Pt+ +lvv+yL++++ ++++++ ++i++v+i++++Pwd+   ++++++  +fF++++++   ++r+nra+ +g+Wk  g++ +v++k     ++
  OMERI11G12060.1  19 PTNADLVVHYLHRRTIQEPMPC-DFITNVNILQHNPWDIV-PAEEKTNGKHFFIHEENERLGDHRSNRAAGDGFWKPAGSEVPVYHKrsggaDE 110
                      9*********************.99**************5.455677899************************************98877777 PP

              NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                      +lvg+k+tLvf+ g+++++++t+Wvm+e+rl
  OMERI11G12060.1 111 ALVGMKRTLVFHYGNSSSAKRTEWVMQEFRL 141
                      77***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.60911207IPR003441NAC domain
SuperFamilySSF1019414.45E-3018145IPR003441NAC domain
PfamPF023654.2E-1519141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MASPGVCINL VNGTTTRLPT NADLVVHYLH RRTIQEPMPC DFITNVNILQ HNPWDIVPAE  60
EKTNGKHFFI HEENERLGDH RSNRAAGDGF WKPAGSEVPV YHKRSGGADE ALVGMKRTLV  120
FHYGNSSSAK RTEWVMQEFR LAGATLIPCP MTRPATGDGS MHPCHRTGTT IATENDGSPS  180
AGQTHGPLEK TMVEPDSSLR ICCIYKKRQR APQFIIPPSI GDARELILAL PAIGNTREVT  240
LTLPAIDFLG QPSFEEGSDV SADVITDDKD GYGHGMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-161914123140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2420100.0AK242010.1 Oryza sativa Japonica Group cDNA, clone: J075106F03, full insert sequence.
GenBankEU8470010.0EU847001.1 Oryza sativa Japonica Group clone KCS322B05 NAM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616648.10.0NAC transcription factor NAM-1
TrEMBLA0A0E0F6160.0A0A0E0F616_9ORYZ; Uncharacterized protein
STRINGORUFI11G15720.10.0(Oryza rufipogon)
STRINGOS11T0512100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-23NAC domain containing protein 83