PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G10380.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 449aa    MW: 46114 Da    PI: 7.605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G10380.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-09275322455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  OMERI11G10380.3 275 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 322
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.75E-11269326No hitNo description
SuperFamilySSF474594.19E-17269339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-17271338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6275322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGGMHEAALM  60
DELASRLGGV CGGGLGGGGV PSPPSSSRYA SCYSTPVGSP CKPAPAPPAP SLLAARMSCL  120
AAGGHGGGKL SRAASSQSLL AEPASAGGVH QLPASDGSSS DAPSRKRKAP VAKSRGKDAA  180
TAIAKVLPLL SASPLQSRRR TSPETMVNFP QSPEPGTKAK KCKLSADAAG DEDTKPVAGD  240
AGHGGNGKGK VLDAAGEPPK DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQDLVPG  300
CNKVTGKAVM LDEIINYVQS LQRQVEFLSM KLSTVNPQLD FDVDNFIPKD QANDPSMPAP  360
LSLPPPPPSL SYSPEGASPA ICYASSQGTA MQSVVTSTKH LETAPTFANH HIIPVPSLDG  420
FHSAHSQAGS CMWEDDLQSV VQMGFRGNT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615632.10.0transcription factor BHLH089-like isoform X1
TrEMBLA0A0E0F5D90.0A0A0E0F5D9_9ORYZ; Uncharacterized protein
STRINGOMERI11G10030.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.19e-54bHLH family protein