PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G10370.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1764aa    MW: 198085 Da    PI: 7.9634
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G10370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001104126123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +C k F+++     H+r+H
  OMERI11G10370.1 104 FACRICRKEFNTRKVVDGHMRVH 126
                      78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.91E-5103126No hitNo description
SMARTSM003550.018104126IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SuperFamilySSF576676.91E-5202231No hitNo description
SMARTSM003550.26207231IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577207236IPR007087Zinc finger, C2H2
PROSITE patternPS000280209231IPR007087Zinc finger, C2H2
SMARTSM00355260264286IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.60.10.102.6E-13765957IPR005135Endonuclease/exonuclease/phosphatase
SuperFamilySSF562198.77E-21766958IPR005135Endonuclease/exonuclease/phosphatase
PROSITE profilePS5087813.989701263IPR000477Reverse transcriptase domain
SuperFamilySSF566721.33E-1810751294No hitNo description
CDDcd016505.72E-2810761263No hitNo description
PfamPF000787.7E-2510781263IPR000477Reverse transcriptase domain
PROSITE profilePS508789.65513551621IPR000477Reverse transcriptase domain
PfamPF139667.6E-914371485IPR026960Reverse transcriptase zinc-binding domain
PfamPF000782.4E-1614551621IPR000477Reverse transcriptase domain
SuperFamilySSF566721.14E-1114851650No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1764 aa     Download sequence    Send to blast
MEGGHRFCRP KVDDDDGIEE GEIYYDCHVS GSETDDDDEH HRRAVLPPRD NGDGCTEHKR  60
CRLDNAATAP APSAGSVLTT SNRSAIVAIA SAAAAAPTMA REVFACRICR KEFNTRKVVD  120
GHMRVHRQRA IATPKDDAAD NSRVTVVAEP NTDLDLSGAH GSSSALPSPP APLANPPNHN  180
HAVGHQPMAA ALNAGVVEGA PQQSLPYRCK MQGCGRAFPT HQGLGGHAAG HQNRSKAAAA  240
AASEKGSSGV GADRCDGGAG SSKHRYGKCG MEWKIGDALG GHMRKHQTKE KVTMNKKEPN  300
VAGKHMSLGP PPSPELTPAA AEDDQAEVEA AAEAAAPAEA AALPPVESGA AAPDVGAAPA  360
APLPAPIAGM GTLVSILGYF VTEVDMAAFR ASNVIRFKVG MMELDPLPLK LILTTPKGLL  420
YQACFELDEV RFNDNILEDF QRGSDGMLKS NHKSGQRSGK QIVKVNGKND AGTVLGGSVS  480
NVGNLLVNVP TSEIISDGDQ AKSTQFLRDR ALAYQMQAAE VRLQNASGLE KSMTSKETTP  540
TQEEVVQLTQ DKDLRQTEDR ICNQFNQYRD VWDCEDYMDS QESEGSFAKR LGISLAEDTM  600
GLDSQEEEMR RSKRHKDRED KKPQDMAIER KEAQNAFINK GQNNIPSIVA ESNVSLINMA  660
SILGVSLGCA IEDVESNLNL IKDLELARIN LFLKEDKNDQ NFEINKKEVD GTSTDDDWSE  720
DDSSDNGNSA LDDIELMLKQ VQSSMKKRNQ RKGNLEIFKV TPKVPKKRGH LQDLIRDHKL  780
DFVAILETIR QDFSDEMLNK LSSGRNMSWR WQAASGRSGG ILLGIDSDKL EILEETVGNF  840
HMRLKLSNVD NKKVWELMAV YGAAQNDQKA AFLTELAKET YSQKFPLIVG GDFNILRKES  900
EKNKAGGYTK WSFIFNSIID QANLREIQMS GRQFTWCNNQ DSPTLEKLDR VFINNEWEVE  960
ESWNAVYHGN NLEKWQKRLK YLRKKLKGWN KNWEGEYRRR KKEILDKIEE IDTLAETRGV  1020
DDEGVITGQH NLLTYITNFY KNLFGHTKNN TCSLNMDGVV QVSEEDRLEL TKPFCMDENG  1080
ILFKVDFEKA YDKVDWVFIY RMLKSKGFPD QWCDWVMKVV RGGKVAIKVN DEIGPYFKTH  1140
KGLRQGDPLS PLLFNLAAEA LTLLVQRAEN NSLVEGLPVS QNNKVTILQY ADDTIFMIKD  1200
DIEQARNLKF ILCLFEQLSG LKINFNKSEV FCFGEAVERQ NVYSEIFTCK IGTLPMRYLG  1260
VPIHKKRLLI KDWKTAENKM EHKLECWQSK LQSIGGRLIL INASLSNVPL YMLSFYKIPQ  1320
GVKEKMDLFR KRLLWQEDQG IRKYHLVQWP VICSPRDQGG LGILDLETMN IALLGKWLWN  1380
LENGEGWWQD ILRDKYLNKK TLSGVRNKAG DSHFWQGLME VDKKDRLWWN LTKNGLFTVK  1440
SLYRALKLQQ IACPFKKIWN IKVPLKIRIF LWLFLKNKIL TKXAIKVNDE IGPYFKTHKG  1500
LRQGDPLSPL LFNLAAEALT LLVQRAENNS LVEGLPVSQN NKVTILQYAD DTIFMIKDDI  1560
EQARNMKFIL CLFEQLSGLK INFNKSEVFC FGEAVERQNV YSEIFTCKIG TLPMRYLGVP  1620
IHKKRLLIKD WKTAENKMEH KLGCWQGKLQ SIGGRLILTN ASLSNVPLYM LSFYKIPQGV  1680
KEKMDLFRKR LLWQEDQGIR KYHLVQWPVI CSPRDQGGLG ILDLETMNIA LLGKWLWNLE  1740
NGEEFGGKPK KVGAGSQSGK AGGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19821001RKKLKGWNKNWEGEYRRRKK
29971002RRRKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453670.0AC145367.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0064J09 map near 50283S, complete sequence.
GenBankAK1109140.0AK110914.1 Oryza sativa Japonica Group cDNA clone:002-173-C05, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0F5D60.0A0A0E0F5D6_9ORYZ; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP171081012