PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI11G08010.6

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 855aa MW: 94118.6 Da PI: 6.6077

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI11G08010.6	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.9	2.3e-29	529	579	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ OMERI11G08010.6 529 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 579 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.325	518	599	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-26	532	579	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.21E-24	751	846	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.7E-24	757	839	No hit	No description
SMART	SM00666	1.4E-25	760	842	IPR000270	PB1 domain
Pfam	PF00564	5.4E-19	760	841	IPR000270	PB1 domain
PROSITE profile	PS51745	26.274	760	842	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence Send to blast
MDGGGKPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQQRLLHV 60 STAAGSSSRQ DDANVSITEE GTTTRTRSDR AAGLASGEPV AAGIGSVPKP FDGVTLTERM 120 LRALAMLKEA SGGEAILVQV WMPVRNGEQH VLTTSDQPFL LDQKLRGYRE VSRQFTFSAE 180 EGPGLFPGMP GRVFMSGMPE WTSNVMYYHG SEYLRVDYAR RHEVRGSLAM PVFNSSGGSC 240 CAVLEVVMTR EKDNFCLEMV DVSNALQSYS RDQKLALMEI FDVLQAVCQA HLLPLALAWI 300 PVCSKRDVLV SVEYGAKFGK RNKEVLCIEE SACYVNDTRM RDFVQVCAEH PLEKGQGVTG 360 NAYLSNNPFF SSDVKDSDMH AYPLVNHARK FGLHAAVAIR LRSTYTKNDD YVLEFFLPVL 420 CKGGEEQQLL LDSISATMRK VCKSLRTVSD AELKEDVTRK PSNENRSGTR CPSPVNLIYS 480 GREIDVPNET KTNTPLEYQI GSIDEQLADT KSTNKCSNAS GEKRRSSSEK SVSLSVLQQY 540 FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKIKKVN RSLKKIQNVI SSVHGVEGVL 600 KYDPSTGCLI SSVSPSIEPV LMNVEHKGQD VLHKLQNKQN GEINFDMDDG ELFRNSHSTR 660 TLSGAFCEDM SNGLYVAREM TCAAKTGTRM ERLEHKPSSR DSFSTPQEYR TESETDKSNK 720 NAKQSLPSSS SMTDCSSGGI SSGETFKSIK SQSANESNTT VVVKASYKND TIRFKLLPSM 780 KYEQLLEEIA KRLKLSVGVF QLKYKDDEGD WVILASDADL QECLEILDTT RLHILKLQVQ 840 DVVCPIGSSS AMVAF

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence Send to blast

MDGGGKPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQQRLLHV  60
STAAGSSSRQ DDANVSITEE GTTTRTRSDR AAGLASGEPV AAGIGSVPKP FDGVTLTERM  120
LRALAMLKEA SGGEAILVQV WMPVRNGEQH VLTTSDQPFL LDQKLRGYRE VSRQFTFSAE  180
EGPGLFPGMP GRVFMSGMPE WTSNVMYYHG SEYLRVDYAR RHEVRGSLAM PVFNSSGGSC  240
CAVLEVVMTR EKDNFCLEMV DVSNALQSYS RDQKLALMEI FDVLQAVCQA HLLPLALAWI  300
PVCSKRDVLV SVEYGAKFGK RNKEVLCIEE SACYVNDTRM RDFVQVCAEH PLEKGQGVTG  360
NAYLSNNPFF SSDVKDSDMH AYPLVNHARK FGLHAAVAIR LRSTYTKNDD YVLEFFLPVL  420
CKGGEEQQLL LDSISATMRK VCKSLRTVSD AELKEDVTRK PSNENRSGTR CPSPVNLIYS  480
GREIDVPNET KTNTPLEYQI GSIDEQLADT KSTNKCSNAS GEKRRSSSEK SVSLSVLQQY  540
FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKIKKVN RSLKKIQNVI SSVHGVEGVL  600
KYDPSTGCLI SSVSPSIEPV LMNVEHKGQD VLHKLQNKQN GEINFDMDDG ELFRNSHSTR  660
TLSGAFCEDM SNGLYVAREM TCAAKTGTRM ERLEHKPSSR DSFSTPQEYR TESETDKSNK  720
NAKQSLPSSS SMTDCSSGGI SSGETFKSIK SQSANESNTT VVVKASYKND TIRFKLLPSM  780
KYEQLLEEIA KRLKLSVGVF QLKYKDDEGD WVILASDADL QECLEILDTT RLHILKLQVQ  840
DVVCPIGSSS AMVAF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064859	0.0	AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616882.1	0.0	protein NLP2-like isoform X2
TrEMBL	A0A0E0F4I9	0.0	A0A0E0F4I9_9ORYZ; Uncharacterized protein
STRING	OMERI11G07870.4	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein