PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI11G08010.3

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 1058aa MW: 117166 Da PI: 7.3577

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI11G08010.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.5	3e-29	701	751	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ OMERI11G08010.3 701 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 751 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.325	690	771	IPR003035	RWP-RK domain
Pfam	PF02042	4.9E-26	704	751	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.18E-24	951	1046	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.2E-24	957	1039	No hit	No description
SMART	SM00666	1.4E-25	960	1042	IPR000270	PB1 domain
Pfam	PF00564	7.1E-19	960	1041	IPR000270	PB1 domain
PROSITE profile	PS51745	26.274	960	1042	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1058 aa Download sequence Send to blast
MVIDLTVTQR INSPSKSSNF CLGKEKLSKF QTNKNKLKHE KLRDWQMTKM PPSQYLLSSV 60 PSTPPYSIPF SPPPPHRRRR AAGRRAEQSR GESRPPPIEA EAVRIERMDG GGKPDGDPVP 120 DMDMLMLSSA LDGLDSYTDL VAGSSVADSI FSALTCFPPS QQRLLHVSTA AGSSSRQDDA 180 NVSITEEGTT TRTRSDRAAG LASGEPVAAG IGSVPKPFDG VTLTERMLRA LAMLKEASGG 240 EAILVQVWMP VRNGEQHVLT TSDQPFLLDQ KLRGYREVSR QFTFSAEEGP GLFPGMPGRV 300 FMSGMPEWTS NVMYYHGSEY LRVDYARRHE VRGSLAMPVF NSSGGSCCAV LEVVMTREKD 360 NFCLEMVDVS NALQGNLDQF AYLDQLEVLG QSGRQAEFLV LYITHKHKPP PIIQLPRTSW 420 NLETGQSIQS QISPIESYSR DQKLALMEIF DVLQAVCQAH LLPLALAWIP VCSKRDVLVS 480 VEYGAKFGKR NKEVLCIEES ACYVNDTRMR DFVQVCAEHP LEKGQGVTGN AYLSNNPFFS 540 SDVKDSDMHA YPLVNHARKF GLHAAVAIRL RSTYTKNDDY VLEFFLPVLC KGGEEQQLLL 600 DSISATMRKV CKSLRTVSDA ELKEDVTRKP SNENRSGTRC PSPVNLIYSG REIDVPNETK 660 TNTPLEYQIG SIDEQLADTK STNKLIKCSN ASGEKRRSSS EKSVSLSVLQ QYFSGSLKDA 720 AKSIGVCPTT LKRICRQHGI SRWPSRKIKK VNRSLKKIQN VISSVHGVEG VLKYDPSTGC 780 LISSVSPSIE PVLMNVEHKG SDPLPIESEL PHLNFEPDCD AYRREHAGQD VLHKLQNKQN 840 GEINFDMDDG ELFRNSHSTR TLSGAFCEDM SNGLYVAREM TCAAKTGTRM ERLEHKPSSR 900 DSFSTPQEYR TESETDKSNK NAKQSLPSSS SMTDCSSGGI SSGETFKSIK SQSANESNTT 960 VVVKASYKND TIRFKLLPSM KYEQLLEEIA KRLKLSVGVF QLKYKDDEGD WVILASDADL 1020 QECLEILDTT RLHILKLQVQ DVVCPIGSSS GSCSMLGP

Sequence ? help Back to Top

Protein Sequence Length: 1058 aa Download sequence Send to blast

MVIDLTVTQR INSPSKSSNF CLGKEKLSKF QTNKNKLKHE KLRDWQMTKM PPSQYLLSSV  60
PSTPPYSIPF SPPPPHRRRR AAGRRAEQSR GESRPPPIEA EAVRIERMDG GGKPDGDPVP  120
DMDMLMLSSA LDGLDSYTDL VAGSSVADSI FSALTCFPPS QQRLLHVSTA AGSSSRQDDA  180
NVSITEEGTT TRTRSDRAAG LASGEPVAAG IGSVPKPFDG VTLTERMLRA LAMLKEASGG  240
EAILVQVWMP VRNGEQHVLT TSDQPFLLDQ KLRGYREVSR QFTFSAEEGP GLFPGMPGRV  300
FMSGMPEWTS NVMYYHGSEY LRVDYARRHE VRGSLAMPVF NSSGGSCCAV LEVVMTREKD  360
NFCLEMVDVS NALQGNLDQF AYLDQLEVLG QSGRQAEFLV LYITHKHKPP PIIQLPRTSW  420
NLETGQSIQS QISPIESYSR DQKLALMEIF DVLQAVCQAH LLPLALAWIP VCSKRDVLVS  480
VEYGAKFGKR NKEVLCIEES ACYVNDTRMR DFVQVCAEHP LEKGQGVTGN AYLSNNPFFS  540
SDVKDSDMHA YPLVNHARKF GLHAAVAIRL RSTYTKNDDY VLEFFLPVLC KGGEEQQLLL  600
DSISATMRKV CKSLRTVSDA ELKEDVTRKP SNENRSGTRC PSPVNLIYSG REIDVPNETK  660
TNTPLEYQIG SIDEQLADTK STNKLIKCSN ASGEKRRSSS EKSVSLSVLQ QYFSGSLKDA  720
AKSIGVCPTT LKRICRQHGI SRWPSRKIKK VNRSLKKIQN VISSVHGVEG VLKYDPSTGC  780
LISSVSPSIE PVLMNVEHKG SDPLPIESEL PHLNFEPDCD AYRREHAGQD VLHKLQNKQN  840
GEINFDMDDG ELFRNSHSTR TLSGAFCEDM SNGLYVAREM TCAAKTGTRM ERLEHKPSSR  900
DSFSTPQEYR TESETDKSNK NAKQSLPSSS SMTDCSSGGI SSGETFKSIK SQSANESNTT  960
VVVKASYKND TIRFKLLPSM KYEQLLEEIA KRLKLSVGVF QLKYKDDEGD WVILASDADL  1020
QECLEILDTT RLHILKLQVQ DVVCPIGSSS GSCSMLGP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064859	0.0	AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616880.1	0.0	protein NLP2-like isoform X1
Refseq	XP_015616881.1	0.0	protein NLP2-like isoform X1
TrEMBL	A0A0E0F4I6	0.0	A0A0E0F4I6_9ORYZ; Uncharacterized protein
STRING	OGLUM11G08660.3	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein