PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI11G08010.11

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 996aa MW: 110139 Da PI: 7.5571

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI11G08010.11	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	2.8e-29	639	689	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ OMERI11G08010.11 639 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 689 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.325	628	709	IPR003035	RWP-RK domain
Pfam	PF02042	4.5E-26	642	689	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.52E-24	889	984	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.1E-24	895	977	No hit	No description
PROSITE profile	PS51745	26.274	898	980	IPR000270	PB1 domain
SMART	SM00666	1.4E-25	898	980	IPR000270	PB1 domain
Pfam	PF00564	6.6E-19	898	979	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence Send to blast
MVIDLTVTQR INSPSKSSNF CLGKEKLSKF QTNKNKLKHE KLRDWQMTKM PPSQYLLSSV 60 PSTPPYSIPF SPPPPHRRRR AAGRRAEQSR GESRPPPIEA EAVRIERMDG GGKPDGDPVP 120 DMDMLMLSSA LDGLDSYTDL VAGSSVADSI FSALTCFPPS QQRLLHVSTA AGSSSRQDDA 180 NVSITEEGTT TRTRSDRAAG LASGEPVAAG IGSVPKPFDG VTLTERMLRA LAMLKEASGG 240 EAILVQVWMP VRNGEQHVLT TSDQPFLLDQ KLRGYREVSR QFTFSAEEGP GLFPGMPGRV 300 FMSGMPEWTS NVMYYHGSEY LRVDYARRHE VRGSLAMPVF NSSGGSCCAV LEVVMTREKD 360 NFCLEMVDVS NALQSYSRDQ KLALMEIFDV LQAVCQAHLL PLALAWIPVC SKRDVLVSVE 420 YGAKFGKRNK EVLCIEESAC YVNDTRMRDF VQVCAEHPLE KGQGVTGNAY LSNNPFFSSD 480 VKDSDMHAYP LVNHARKFGL HAAVAIRLRS TYTKNDDYVL EFFLPVLCKG GEEQQLLLDS 540 ISATMRKVCK SLRTVSDAEL KEDVTRKPSN ENRSGTRCPS PVNLIYSGRE IDVPNETKTN 600 TPLEYQIGSI DEQLADTKST NKLIKCSNAS GEKRRSSSEK SVSLSVLQQY FSGSLKDAAK 660 SIGVCPTTLK RICRQHGISR WPSRKIKKVN RSLKKIQNVI SSVHGVEGVL KYDPSTGCLI 720 SSVSPSIEPV LMNVEHKGSD PLPIESELPH LNFEPDCDAY RREHAGQDVL HKLQNKQNGE 780 INFDMDDGEL FRNSHSTRTL SGAFCEDMSN GLYVAREMTC AAKTGTRMER LEHKPSSRDS 840 FSTPQEYRTE SETDKSNKNA KQSLPSSSSM TDCSSGGISS GETFKSIKSQ SANESNTTVV 900 VKASYKNDTI RFKLLPSMKY EQLLEEIAKR LKLSVGVFQL KYKDDEGDWV ILASDADLQE 960 CLEILDTTRL HILKLQVQDV VCPIGSSSGS CSMLGP

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence Send to blast

MVIDLTVTQR INSPSKSSNF CLGKEKLSKF QTNKNKLKHE KLRDWQMTKM PPSQYLLSSV  60
PSTPPYSIPF SPPPPHRRRR AAGRRAEQSR GESRPPPIEA EAVRIERMDG GGKPDGDPVP  120
DMDMLMLSSA LDGLDSYTDL VAGSSVADSI FSALTCFPPS QQRLLHVSTA AGSSSRQDDA  180
NVSITEEGTT TRTRSDRAAG LASGEPVAAG IGSVPKPFDG VTLTERMLRA LAMLKEASGG  240
EAILVQVWMP VRNGEQHVLT TSDQPFLLDQ KLRGYREVSR QFTFSAEEGP GLFPGMPGRV  300
FMSGMPEWTS NVMYYHGSEY LRVDYARRHE VRGSLAMPVF NSSGGSCCAV LEVVMTREKD  360
NFCLEMVDVS NALQSYSRDQ KLALMEIFDV LQAVCQAHLL PLALAWIPVC SKRDVLVSVE  420
YGAKFGKRNK EVLCIEESAC YVNDTRMRDF VQVCAEHPLE KGQGVTGNAY LSNNPFFSSD  480
VKDSDMHAYP LVNHARKFGL HAAVAIRLRS TYTKNDDYVL EFFLPVLCKG GEEQQLLLDS  540
ISATMRKVCK SLRTVSDAEL KEDVTRKPSN ENRSGTRCPS PVNLIYSGRE IDVPNETKTN  600
TPLEYQIGSI DEQLADTKST NKLIKCSNAS GEKRRSSSEK SVSLSVLQQY FSGSLKDAAK  660
SIGVCPTTLK RICRQHGISR WPSRKIKKVN RSLKKIQNVI SSVHGVEGVL KYDPSTGCLI  720
SSVSPSIEPV LMNVEHKGSD PLPIESELPH LNFEPDCDAY RREHAGQDVL HKLQNKQNGE  780
INFDMDDGEL FRNSHSTRTL SGAFCEDMSN GLYVAREMTC AAKTGTRMER LEHKPSSRDS  840
FSTPQEYRTE SETDKSNKNA KQSLPSSSSM TDCSSGGISS GETFKSIKSQ SANESNTTVV  900
VKASYKNDTI RFKLLPSMKY EQLLEEIAKR LKLSVGVFQL KYKDDEGDWV ILASDADLQE  960
CLEILDTTRL HILKLQVQDV VCPIGSSSGS CSMLGP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064859	0.0	AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616880.1	0.0	protein NLP2-like isoform X1
Refseq	XP_015616881.1	0.0	protein NLP2-like isoform X1
TrEMBL	A0A0E0F4I4	0.0	A0A0E0F4I4_9ORYZ; Uncharacterized protein
STRING	OMERI11G07870.4	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein