PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G08010.10
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 536aa    MW: 59836.1 Da    PI: 7.4161
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G08010.10genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK55.21.4e-172322602452
            RWP-RK  24 eLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                       + ++c+T+LKriCRq+GI+RWP+Rkik++
  OMERI11G08010.10 232 DTKICPTTLKRICRQHGISRWPSRKIKKV 260
                       557************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151911.979196280IPR003035RWP-RK domain
PfamPF020422.8E-14234260IPR003035RWP-RK domain
SuperFamilySSF542773.07E-24432527No hitNo description
Gene3DG3DSA:3.10.20.2408.7E-25438520No hitNo description
SMARTSM006661.4E-25441523IPR000270PB1 domain
PfamPF005642.8E-19441522IPR000270PB1 domain
PROSITE profilePS5174526.274441523IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MEIFDVLQAV CQAHLLPLAL AWIPVCSKRD VLVSVEYGAK FGKRNKEVLC IEESACYVND  60
TRMRDFVQVC AEHPLEKGQG VTGNAYLSNN PFFSSDVKDS DMHAYPLVNH ARKFGLHAAV  120
AIRLRSTYTK NDDYVLEFFL PVLCKGGEEQ QLLLDSISAT MRKVCKSLRT VSDAELKEDV  180
TRKPSNENRS GTRCPSPVNL IYSGREIDVP NETKTNTPLE YQIGSIDEQL ADTKICPTTL  240
KRICRQHGIS RWPSRKIKKV NRSLKKIQNV ISSVHGVEGV LKYDPSTGCL ISSVSPSIEP  300
VLMNVEHKGQ DVLHKLQNKQ NGEINFDMDD GELFRNSHST RTLSGAFCED MSNGLYVARE  360
MTCAAKTGTR MERLEHKPSS RDSFSTPQEY RTESETDKSN KNAKQSLPSS SSMTDCSSGG  420
ISSGETFKSI KSQSANESNT TVVVKASYKN DTIRFKLLPS MKYEQLLEEI AKRLKLSVGV  480
FQLKYKDDEG DWVILASDAD LQECLEILDT TRLHILKLQV QDVVCPIGSS SAMVAF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0648590.0AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616882.10.0protein NLP2-like isoform X2
TrEMBLA0A0E0F4I30.0A0A0E0F4I3_9ORYZ; Uncharacterized protein
STRINGOMERI11G07870.40.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.21e-119Nin-like family protein