PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G06450.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 597aa    MW: 68279.8 Da    PI: 8.378
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G06450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.72.2e-0984120139
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskeg 39 
                      kfY++YA+e+ Fsvr+s++kk+  n+ei  ++++Cs+eg
  OMERI11G06450.1  84 KFYKSYAHEARFSVRVSQHKKQ--NEEILFKRYYCSREG 120
                      6*****************9998..999***********9 PP
2FAR122.63.4e-071211516090
             FAR1  60 tgCkaklkvkkekdgkwevtkleleHnHela 90 
                      +gC+a+++vk+ +d+k++++++ +eH+H ++
  OMERI11G06450.1 121 CGCEAHIVVKLGSDKKYRISSMIEEHSHGFV 151
                      89**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-684120IPR004330FAR1 DNA binding domain
PfamPF031013.3E-5121151IPR004330FAR1 DNA binding domain
PfamPF105511.8E-9268314IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MESSPATPWT PAQGKDVLPH QSGFDDLMNS GHRHGSCVDA GVVAHLEQPS TPQPTSSPSI  60
AESCKEHLKP MVGMIFDTLT DVEKFYKSYA HEARFSVRVS QHKKQNEEIL FKRYYCSREG  120
CGCEAHIVVK LGSDKKYRIS SMIEEHSHGF VSPDKRHLLR SNRTVSERAK STLFSCHKAS  180
IGTSQAFRLL QVSDGGFQNV GCTLRDLQNY YRDLRSKIKD ADAQMFVGQL ERKKEVNPAF  240
FYEFMVDKQG RLVRVFWADA ICRKNYSVFG DVLSATGGVA PRLIIIDEDA SMKAAIAQIL  300
PNTVHRLCMW HTMEKVPEKV GPSIREDGEF WDRLHKCVWG SEDSDNFESE WNSIMAKYGL  360
IGNEWFSTKF DIRQSWIPAY FMDIPLVGIL RTTSRSESAN SFFNRFIHRK LTFVEFWLRF  420
DTALECQRQE ELKADNTSLH TNPKLMTPWD MEKQCSGIYT HEVFSNLLDE KAKDPMEVAM  480
RKKISDSRNK FEDLIQMAKN SEQGMEFLYS SLSDLVEPLQ KIIPAATVNK QDEFESFLGS  540
KIPDEVEIHP PNDIKSKGPC KRIKKSKEKK APRKRKRGKC KQVVDHDARN CPNNTVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1569575KAPRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00434DAPTransfer from AT4G15090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1213660.0AC121366.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0111K12, complete sequence.
GenBankAC1376180.0AC137618.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0090H02, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655317.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_006658608.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0E0F3Z30.0A0A0E0F3Z3_9ORYZ; Uncharacterized protein
STRINGSb01g026910.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.19e-61FAR1 family protein