PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G05850.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 363aa    MW: 40320.7 Da    PI: 9.8858
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G05850.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.55.1e-072292741762
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      A+rsR RK+++i+eLe+kv++L++e  +   e+e l+++   l+ e
  OMERI11G05850.3 229 AQRSRVRKLQYIAELERKVQALQSEGIDVSAEMEFLSQQNIMLDLE 274
                      89***********************999999999888887666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-5218277IPR004827Basic-leucine zipper domain
CDDcd147031.90E-15219269No hitNo description
SuperFamilySSF579596.88E-6228271No hitNo description
Gene3DG3DSA:1.20.5.1704.7E-7229271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MMMANAKLPK QALLPPRSPF PTAAGPYAGD HGPIARPQGA PHHRHGHGHG HGHHQRTSSE  60
SFIEEQPSWL DDLLNEPETP VRQHGRAGHR RSSSDSFALF DGGAAAGAYA NGFEGMGGGG  120
GQAAPWGGVQ EYYAKPSSFG RQQGRPWEQG MNNLVNYRQG GGPPMPAKEK VGGHHGSPSV  180
LRDHDHGMDR RSSDESGHDQ KVGPERKDGV PPKHAQSEAD TKRAKQQYAQ RSRVRKLQYI  240
AELERKVQAL QSEGIDVSAE MEFLSQQNIM LDLENKALKQ RLESLAQEQL IKRFQQEMFE  300
REIGRLRSLY QQQQQQQKQP QPTTTLSRSN SRDLDSQFAN LSLKHKDPNS GPLRTQSSSI  360
FFT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0722670.0AK072267.1 Oryza sativa Japonica Group cDNA clone:J023004I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617316.10.0uncharacterized protein At4g06598
TrEMBLA0A0E0F3R50.0A0A0E0F3R5_9ORYZ; Uncharacterized protein
STRINGOPUNC11G06870.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.22e-64bZIP family protein